A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.3
nTPM
Monaco:
5.9
nTPM
Schmiedel:
15.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.3
HPA sample
nTPM
Memory B-cell nTPM: 1.2
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.7
P10809_1017
2.0
P10809_1025
1.5
P10809_1044
1.1
P10809_1063
0.7
P10809_1092
0.7
P10809_1105
1.4
Naive B-cell nTPM: 1.3
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.7
P10809_1011
1.6
P10809_1029
0.7
P10809_1048
1.0
P10809_1067
2.2
P10809_1091
1.4
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 3.8
Samples: 4
Max nTPM: 6.7
Min nTPM: 1.0
RHH5310_R3677
6.7
RHH5218_R3590
1.0
RHH5247_R3619
3.9
RHH5276_R3648
3.7
Naive B-cell nTPM: 5.7
Samples: 4
Max nTPM: 7.5
Min nTPM: 3.1
RHH5308_R3675
7.3
RHH5216_R3588
3.1
RHH5245_R3617
7.5
RHH5274_R3646
4.9
Non-switched memory B-cell nTPM: 5.1
Samples: 4
Max nTPM: 7.9
Min nTPM: 2.2
RHH5309_R3676
2.2
RHH5217_R3589
3.9
RHH5246_R3618
7.9
RHH5275_R3647
6.5
Plasmablast nTPM: 4.1
Samples: 4
Max nTPM: 7.8
Min nTPM: 1.8
RHH5312_R3679
7.8
RHH5220_R3592
2.5
RHH5249_R3621
4.3
RHH5278_R3650
1.8
Switched memory B-cell nTPM: 5.9
Samples: 4
Max nTPM: 9.1
Min nTPM: 2.4
RHH5311_R3678
3.6
RHH5219_R3591
8.5
RHH5248_R3620
9.1
RHH5277_R3649
2.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
Schmiedel sample id
TPM
Naive B-cell TPM: 15.9
Samples: 91
Max TPM: 28.5
Min TPM: 6.2
B_CELL_NAIVE_1
28.5
B_CELL_NAIVE_2
27.7
B_CELL_NAIVE_3
27.1
B_CELL_NAIVE_4
25.5
B_CELL_NAIVE_5
25.2
B_CELL_NAIVE_6
25.0
B_CELL_NAIVE_7
23.9
B_CELL_NAIVE_8
23.8
B_CELL_NAIVE_9
23.8
B_CELL_NAIVE_10
23.4
B_CELL_NAIVE_11
22.9
B_CELL_NAIVE_12
22.8
B_CELL_NAIVE_13
22.2
B_CELL_NAIVE_14
22.0
B_CELL_NAIVE_15
21.7
B_CELL_NAIVE_16
21.3
B_CELL_NAIVE_17
20.2
B_CELL_NAIVE_18
19.4
B_CELL_NAIVE_19
19.4
B_CELL_NAIVE_20
19.3
B_CELL_NAIVE_21
19.3
B_CELL_NAIVE_22
19.3
B_CELL_NAIVE_23
19.0
B_CELL_NAIVE_24
18.3
B_CELL_NAIVE_25
18.2
B_CELL_NAIVE_26
18.0
B_CELL_NAIVE_27
17.7
B_CELL_NAIVE_28
17.7
B_CELL_NAIVE_29
17.7
B_CELL_NAIVE_30
17.6
B_CELL_NAIVE_31
17.2
B_CELL_NAIVE_32
17.0
B_CELL_NAIVE_33
16.6
B_CELL_NAIVE_34
16.6
B_CELL_NAIVE_35
16.6
B_CELL_NAIVE_36
16.4
B_CELL_NAIVE_37
16.4
B_CELL_NAIVE_38
16.3
B_CELL_NAIVE_39
16.3
B_CELL_NAIVE_40
15.9
B_CELL_NAIVE_41
15.9
B_CELL_NAIVE_42
15.9
B_CELL_NAIVE_43
15.9
B_CELL_NAIVE_44
15.9
B_CELL_NAIVE_45
15.8
B_CELL_NAIVE_46
15.7
B_CELL_NAIVE_47
15.5
B_CELL_NAIVE_48
15.4
B_CELL_NAIVE_49
15.0
B_CELL_NAIVE_50
14.8
B_CELL_NAIVE_51
14.7
B_CELL_NAIVE_52
14.6
B_CELL_NAIVE_53
14.4
B_CELL_NAIVE_54
14.2
B_CELL_NAIVE_55
14.0
B_CELL_NAIVE_56
14.0
B_CELL_NAIVE_57
13.9
B_CELL_NAIVE_58
13.8
B_CELL_NAIVE_59
13.8
B_CELL_NAIVE_60
13.6
B_CELL_NAIVE_61
13.6
B_CELL_NAIVE_62
13.5
B_CELL_NAIVE_63
13.3
B_CELL_NAIVE_64
13.2
B_CELL_NAIVE_65
12.9
B_CELL_NAIVE_66
12.8
B_CELL_NAIVE_67
12.6
B_CELL_NAIVE_68
12.6
B_CELL_NAIVE_69
12.6
B_CELL_NAIVE_70
12.5
B_CELL_NAIVE_71
12.4
B_CELL_NAIVE_72
12.2
B_CELL_NAIVE_73
11.9
B_CELL_NAIVE_74
11.6
B_CELL_NAIVE_75
11.3
B_CELL_NAIVE_76
11.3
B_CELL_NAIVE_77
11.0
B_CELL_NAIVE_78
10.9
B_CELL_NAIVE_79
10.6
B_CELL_NAIVE_80
10.4
B_CELL_NAIVE_81
10.2
B_CELL_NAIVE_82
10.1
B_CELL_NAIVE_83
9.7
B_CELL_NAIVE_84
9.1
B_CELL_NAIVE_85
9.0
B_CELL_NAIVE_86
8.7
B_CELL_NAIVE_87
8.7
B_CELL_NAIVE_88
7.9
B_CELL_NAIVE_89
7.6
B_CELL_NAIVE_90
7.1
B_CELL_NAIVE_91
6.2
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