A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
6.4
nTPM
Schmiedel:
20.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Classical monocyte nTPM: 0.7
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.4
P10809_1003
0.8
P10809_1020
0.9
P10809_1039
0.4
P10809_1058
0.9
P10809_1080
0.7
P10809_1107
0.5
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.3
P10809_1004
1.1
P10809_1023
0.6
P10809_1042
1.6
P10809_1061
0.3
P10809_1081
1.3
P10809_1108
0.6
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 8.0
Min nTPM: 0.3
P10809_1005
1.8
P10809_1053
0.3
P10809_1072
8.0
P10809_1082
1.4
P10809_1109
0.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
Monaco sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 4
Max nTPM: 7.7
Min nTPM: 2.7
RHH5313_R3680
7.7
RHH5221_R3593
2.7
RHH5250_R3622
3.5
RHH5279_R3651
4.6
Intermediate monocyte nTPM: 5.7
Samples: 4
Max nTPM: 6.3
Min nTPM: 5.2
RHH5314_R3681
5.4
RHH5222_R3594
5.2
RHH5251_R3623
6.3
RHH5280_R3652
5.7
Non-classical monocyte nTPM: 6.4
Samples: 4
Max nTPM: 9.4
Min nTPM: 4.7
RHH5315_R3682
6.6
RHH5223_R3595
9.4
RHH5252_R3624
4.7
RHH5281_R3653
4.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.5
Schmiedel sample id
TPM
Classical monocyte TPM: 5.8
Samples: 91
Max TPM: 9.7
Min TPM: 3.3
MONOCYTES_1
9.7
MONOCYTES_2
9.4
MONOCYTES_3
9.0
MONOCYTES_4
8.8
MONOCYTES_5
8.4
MONOCYTES_6
8.0
MONOCYTES_7
7.9
MONOCYTES_8
7.5
MONOCYTES_9
7.4
MONOCYTES_10
7.4
MONOCYTES_11
7.3
MONOCYTES_12
7.2
MONOCYTES_13
7.1
MONOCYTES_14
7.0
MONOCYTES_15
6.8
MONOCYTES_16
6.7
MONOCYTES_17
6.7
MONOCYTES_18
6.7
MONOCYTES_19
6.6
MONOCYTES_20
6.6
MONOCYTES_21
6.5
MONOCYTES_22
6.5
MONOCYTES_23
6.4
MONOCYTES_24
6.4
MONOCYTES_25
6.3
MONOCYTES_26
6.3
MONOCYTES_27
6.3
MONOCYTES_28
6.2
MONOCYTES_29
6.2
MONOCYTES_30
6.2
MONOCYTES_31
6.2
MONOCYTES_32
6.1
MONOCYTES_33
6.1
MONOCYTES_34
6.0
MONOCYTES_35
6.0
MONOCYTES_36
6.0
MONOCYTES_37
5.9
MONOCYTES_38
5.9
MONOCYTES_39
5.9
MONOCYTES_40
5.8
MONOCYTES_41
5.8
MONOCYTES_42
5.7
MONOCYTES_43
5.7
MONOCYTES_44
5.7
MONOCYTES_45
5.6
MONOCYTES_46
5.5
MONOCYTES_47
5.5
MONOCYTES_48
5.5
MONOCYTES_49
5.4
MONOCYTES_50
5.4
MONOCYTES_51
5.4
MONOCYTES_52
5.4
MONOCYTES_53
5.3
MONOCYTES_54
5.3
MONOCYTES_55
5.3
MONOCYTES_56
5.3
MONOCYTES_57
5.3
MONOCYTES_58
5.3
MONOCYTES_59
5.2
MONOCYTES_60
5.2
MONOCYTES_61
5.1
MONOCYTES_62
5.1
MONOCYTES_63
5.1
MONOCYTES_64
5.0
MONOCYTES_65
5.0
MONOCYTES_66
5.0
MONOCYTES_67
4.9
MONOCYTES_68
4.9
MONOCYTES_69
4.9
MONOCYTES_70
4.9
MONOCYTES_71
4.9
MONOCYTES_72
4.9
MONOCYTES_73
4.8
MONOCYTES_74
4.8
MONOCYTES_75
4.7
MONOCYTES_76
4.7
MONOCYTES_77
4.6
MONOCYTES_78
4.6
MONOCYTES_79
4.6
MONOCYTES_80
4.5
MONOCYTES_81
4.5
MONOCYTES_82
4.3
MONOCYTES_83
4.3
MONOCYTES_84
4.2
MONOCYTES_85
4.1
MONOCYTES_86
4.0
MONOCYTES_87
3.8
MONOCYTES_88
3.7
MONOCYTES_89
3.5
MONOCYTES_90
3.5
MONOCYTES_91
3.3
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Non-classical monocyte TPM: 20.5
Samples: 90
Max TPM: 30.1
Min TPM: 11.4
M2_1
30.1
M2_2
29.9
M2_3
28.7
M2_4
27.8
M2_5
27.6
M2_6
27.1
M2_7
27.0
M2_8
26.9
M2_9
26.7
M2_10
26.2
M2_11
25.9
M2_12
25.4
M2_13
25.3
M2_14
25.2
M2_15
25.2
M2_16
25.1
M2_17
25.1
M2_18
25.0
M2_19
23.8
M2_20
23.7
M2_21
23.7
M2_22
23.6
M2_23
23.4
M2_24
22.8
M2_25
22.8
M2_26
22.6
M2_27
22.4
M2_28
22.4
M2_29
22.4
M2_30
22.3
M2_31
22.0
M2_32
21.9
M2_33
21.8
M2_34
21.8
M2_35
21.7
M2_36
21.5
M2_37
21.4
M2_38
21.2
M2_39
21.2
M2_40
21.2
M2_41
21.2
M2_42
21.1
M2_43
20.7
M2_44
20.5
M2_45
20.5
M2_46
20.4
M2_47
20.4
M2_48
20.3
M2_49
20.2
M2_50
20.1
M2_51
19.6
M2_52
19.5
M2_53
19.3
M2_54
19.0
M2_55
18.8
M2_56
18.7
M2_57
18.6
M2_58
18.6
M2_59
18.6
M2_60
18.6
M2_61
18.3
M2_62
18.2
M2_63
18.1
M2_64
18.0
M2_65
17.8
M2_66
17.8
M2_67
17.7
M2_68
17.7
M2_69
17.0
M2_70
16.7
M2_71
16.7
M2_72
16.6
M2_73
16.2
M2_74
16.2
M2_75
16.1
M2_76
16.1
M2_77
16.0
M2_78
15.6
M2_79
15.3
M2_80
15.2
M2_81
15.2
M2_82
14.9
M2_83
14.7
M2_84
14.6
M2_85
14.4
M2_86
14.3
M2_87
14.2
M2_88
13.7
M2_89
12.6
M2_90
11.4
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