A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
5.0
nTPM
Schmiedel:
17.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
NK-cell nTPM: 2.7
Samples: 6
Max nTPM: 7.7
Min nTPM: 0.3
P10809_1013
1.5
P10809_1033
7.7
P10809_1052
5.6
P10809_1071
0.3
P10809_1093
1.0
P10809_1103
0.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.0
Monaco sample
nTPM
NK-cell nTPM: 5.0
Samples: 4
Max nTPM: 8.7
Min nTPM: 3.0
RHH5316_R3683
4.8
RHH5224_R3596
3.0
RHH5253_R3625
8.7
RHH5282_R3654
3.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.3
Schmiedel sample id
TPM
NK-cell TPM: 17.3
Samples: 90
Max TPM: 44.3
Min TPM: 6.3
NK_1
44.3
NK_2
38.1
NK_3
33.8
NK_4
33.5
NK_5
33.4
NK_6
28.7
NK_7
27.0
NK_8
26.2
NK_9
26.0
NK_10
25.5
NK_11
25.0
NK_12
24.8
NK_13
24.7
NK_14
23.9
NK_15
23.7
NK_16
23.0
NK_17
22.5
NK_18
22.5
NK_19
22.4
NK_20
22.2
NK_21
21.4
NK_22
21.1
NK_23
20.8
NK_24
20.5
NK_25
20.3
NK_26
20.1
NK_27
19.6
NK_28
19.5
NK_29
19.3
NK_30
19.1
NK_31
18.9
NK_32
18.9
NK_33
18.4
NK_34
18.4
NK_35
18.0
NK_36
17.9
NK_37
17.9
NK_38
17.7
NK_39
17.7
NK_40
17.6
NK_41
17.1
NK_42
17.0
NK_43
16.9
NK_44
16.8
NK_45
16.7
NK_46
16.6
NK_47
16.6
NK_48
16.4
NK_49
16.3
NK_50
16.3
NK_51
16.2
NK_52
16.2
NK_53
15.9
NK_54
15.3
NK_55
15.2
NK_56
15.0
NK_57
14.9
NK_58
14.7
NK_59
14.2
NK_60
13.8
NK_61
13.5
NK_62
13.5
NK_63
13.4
NK_64
12.8
NK_65
12.8
NK_66
12.5
NK_67
12.4
NK_68
12.0
NK_69
11.5
NK_70
11.2
NK_71
10.8
NK_72
10.5
NK_73
10.4
NK_74
10.1
NK_75
9.9
NK_76
9.9
NK_77
9.8
NK_78
9.6
NK_79
9.4
NK_80
9.0
NK_81
9.0
NK_82
8.9
NK_83
8.8
NK_84
8.3
NK_85
7.3
NK_86
7.2
NK_87
7.0
NK_88
6.7
NK_89
6.7
NK_90
6.3
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