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  • TCEAL2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:185.9 nTPM
HPA Brain:75.5 nTPM
GTEx:185.9 nTPM
FANTOM5:92.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.5
Sample id Sample description nTPM
Amygdala
nTPM: 59.5
2514 Male, age 75, right hemisphere 65.0
2814 Male, age 76, right hemisphere 63.1
2695 Female, age 67, right hemisphere 58.5
2517 Female, age 94, left hemisphere 56.1
1987 Female, age 91, left hemisphere 54.6
Basal amygdala
nTPM: 65.5
2243 Female, age 91, right hemisphere 83.3
2685 Female, age 94, left hemisphere 72.0
2827 Female, age 67, right hemisphere 64.3
1955 Male, age 76, both hemispheres 61.4
2609 Male, age 75, right hemisphere 57.6
2110 Male, age 80, left hemisphere 54.2
Central amygdala
nTPM: 65.5
2701 Female, age 91, right hemisphere 88.6
2239 Male, age 80, left hemisphere 78.5
1905 Male, age 76, both hemispheres 58.3
2515 Male, age 75, right hemisphere 56.0
2826 Female, age 94, left hemisphere 46.3
Corticomedial amygdala
nTPM: 75.5
2535 Female, age 67, right hemisphere 103.0
2242 Female, age 91, right hemisphere 85.6
2240 Male, age 76, both hemispheres 83.7
2429 Female, age 94, left hemisphere 69.0
2829 Male, age 80, left hemisphere 65.9
2428 Male, age 75, right hemisphere 45.9
Lateral amygdala
nTPM: 57.1
2255 Female, age 91, right hemisphere 73.2
1883 Male, age 76, both hemispheres 64.0
2256 Male, age 80, left hemisphere 60.5
2534 Female, age 94, left hemisphere 58.1
2516 Male, age 75, right hemisphere 49.5
2830 Female, age 67, right hemisphere 37.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 185.9
Samples: 181

Max nTPM: 384.2
Min nTPM: 79.8
Std nTPM: 51.6
Median nTPM: 177.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 384.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 358.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 331.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 328.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 315.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 302.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 300.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 298.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 293.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 272.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 268.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 266.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 263.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 262.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 261.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 261.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 256.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 256.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 255.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 251.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 249.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 246.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 243.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 243.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 241.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 240.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 238.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 237.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 236.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 235.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 233.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 227.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 227.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 227.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 224.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 224.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 224.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 222.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 221.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 219.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 218.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 218.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 218.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 217.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 216.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 214.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 213.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 212.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 212.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 210.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 209.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 209.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 208.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 208.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 206.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 203.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 202.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 202.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 201.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 201.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 198.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 197.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 197.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 196.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 193.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 192.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 191.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 191.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 191.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 190.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 190.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 190.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 190.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 189.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 188.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 187.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 186.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 186.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 185.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 185.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 185.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 184.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 184.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 184.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 183.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 183.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 183.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 182.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 181.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 177.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 175.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 175.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 174.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 174.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 174.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 173.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 173.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 173.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 172.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 171.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 170.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 168.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 168.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 168.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 167.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 167.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 166.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 165.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 165.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 165.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 165.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 163.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 162.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 161.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 161.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 160.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 160.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 159.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 159.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 157.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 156.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 155.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 153.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 153.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 152.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 151.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 149.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 149.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 149.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 146.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 146.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 146.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 145.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 145.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 145.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 145.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 144.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 144.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 143.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 143.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 143.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 142.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 139.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 137.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 136.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 135.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 135.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 134.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 134.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 133.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 132.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 131.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 130.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 128.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 127.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 126.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 125.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 123.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 117.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 117.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 116.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 110.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 110.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 109.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 108.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 105.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 79.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 92.6
FF:10151-102I7 76 years, female 92.6

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