MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.7 nTPM
HPA Brain:92.8 nTPM
GTEx:141.7 nTPM
FANTOM5:21.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.5
2219 Male, age 76, both hemispheres 70.2
1827 Male, age 72, unknown 65.5
2666 Male, age 74, left hemisphere 59.2
2586 Male, age 75, left hemisphere 57.8
1870 Female, age 42, unknown 55.0
1833 Male, age 53, unknown 51.8
2411 Female, age 72, unknown 49.0
2828 Female, age 72, unknown 48.3
1830 Male, age 51, unknown 47.4
2019 Male, age 18, unknown 40.3
Dorsal raphe nucleus
nTPM: 49.5
1828 Male, age 53, unknown 57.1
2047 Male, age 72, unknown 53.5
2750 Male, age 76, both hemispheres 50.4
2298 Female, age 72, unknown 47.2
2016 Female, age 72, unknown 39.1
Inferior colliculus
nTPM: 66.4
2849 Male, age 72, unknown 99.8
1848 Female, age 42, unknown 60.5
1890 Male, age 53, unknown 55.1
2097 Female, age 72, unknown 50.3
Median raphe nucleus
nTPM: 92.8
2220 Male, age 76, midline 92.8
Periaquaductal grey, anterior
nTPM: 59.3
2502 Female, age 75, unknown 61.4
1947 Male, age 18, unknown 60.2
1795 Male, age 51, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 69.1
2850 Male, age 76, both hemispheres 96.0
1840 Male, age 53, unknown 67.2
2464 Female, age 72, unknown 59.3
1831 Male, age 72, unknown 53.7
Periaquaductal grey, lateral
nTPM: 52.5
2140 Male, age 76, both hemispheres 71.2
2053 Male, age 18, unknown 48.9
2272 Male, age 74, both hemispheres 37.3
Pretectal area
nTPM: 59.5
1816 Male, age 51, unknown 70.3
2407 Male, age 75, both hemispheres 67.0
1944 Female, age 72, unknown 66.5
1817 Female, age 42, unknown 66.3
2825 Male, age 18, unknown 63.6
2224 Female, age 72, unknown 63.1
2007 Male, age 72, unknown 62.6
1815 Male, age 53, unknown 58.6
2667 Female, age 75, unknown 52.5
2316 Male, age 76, right hemisphere 42.4
2273 Male, age 74, both hemispheres 41.7
Red nucleus
nTPM: 42.2
2725 Female, age 75, unknown 58.4
2584 Male, age 75, left hemisphere 46.4
2503 Female, age 72, unknown 43.0
1954 Female, age 42, unknown 42.1
2785 Male, age 18, unknown 41.2
1865 Male, age 51, unknown 41.1
2769 Male, age 72, unknown 40.4
2823 Male, age 76, right hemisphere 39.7
2227 Male, age 72, unknown 39.4
2588 Male, age 74, left hemisphere 39.3
1821 Female, age 72, unknown 39.0
1904 Male, age 53, unknown 36.2
Substantia nigra
nTPM: 53.9
2699 Male, age 18, unknown 66.2
1941 Male, age 53, unknown 65.5
1916 Female, age 42, unknown 61.5
1889 Female, age 72, unknown 60.4
2665 Male, age 74, both hemispheres 59.4
1851 Male, age 51, unknown 50.4
2590 Female, age 75, unknown 49.3
2241 Male, age 72, unknown 46.7
2409 Female, age 72, unknown 44.7
2583 Male, age 75, right hemisphere 34.4
Superior colliculus
nTPM: 50.4
1895 Male, age 76, right hemisphere 59.6
2664 Male, age 75, both hemispheres 58.9
1796 Male, age 53, unknown 56.3
2087 Female, age 72, unknown 55.7
1839 Male, age 51, unknown 54.1
2587 Male, age 74, left hemisphere 51.5
2261 Male, age 18, unknown 50.7
2668 Female, age 75, unknown 41.3
1913 Female, age 42, unknown 41.0
1995 Male, age 72, unknown 35.0
Ventral tegmental area
nTPM: 52.7
2218 Male, age 76, both hemispheres 71.6
1915 Female, age 42, unknown 55.7
2223 Female, age 72, unknown 51.4
1942 Male, age 51, unknown 50.8
2021 Male, age 53, unknown 44.6
2410 Female, age 72, unknown 42.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 141.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.7
Samples: 183

Max nTPM: 336.1
Min nTPM: 38.5
Std nTPM: 44.0
Median nTPM: 136.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 336.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 233.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 225.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 225.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 224.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 223.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 221.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 219.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 211.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 211.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 210.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo