We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
P4HB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • P4HB
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
ARGININE AND PROLINE METABOLISM ISOLATED
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

P4HB
Synonyms DSI, ERBA2L, GIT, P4Hbeta, PDI, PDIA1, PO4DB, PO4HB, PROHB
Gene descriptioni

Full gene name according to HGNC.

Prolyl 4-hydroxylase subunit beta
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Secretory pathway (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Esophageal apical cells, Esophageal suprabasal cells, Extravillous trophoblasts, Migrating cytotrophoblasts, Pancreatic acinar cells, Syncytiotrophoblasts)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Pancreas - Proteolysis (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (Pancreas)
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Endoplasmic reticulum
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q25.3
Chromosome location (bp) 81843159 - 81860856
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

17
Ensembl ENSG00000185624 (version 109)
Entrez gene 5034
HGNC HGNC:8548
UniProt P07237
GeneCards P4HB
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Pancreas - Proteolysis

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
Show surface:
Off
On
Autorotate:
Off
On
PAE plot
Number of interactions: 4
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ERO1A261000
MAPT111918800
NEK710651417
P4HA235640
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 41 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ANKEF116102
BBS4624600
BCL2L117152200
CAPN2281200
CEP767791101
CHCHD24248030
CNNM32601510
COL1A11237013
CST207005
DDIT4L1169100
ERO1A261000
FASTKD1091032
FZD1006000
GABARAPL223763511
GARIN6019000
GNB12213523018
GRN32181200
KLHL42124605
KRT6A730900
KRTAP12-30117000
KRTAP13-2057000
KRTAP4-11061100
KRTAP5-92166200
KRTAP6-30128000
KRTAP9-8072000
LCE1B870900
LCE2D151100
LCE4A163100
LCN2147100
LRFN408003
MAPT111918800
NEK710651417
ODF107200
P4HA235640
PER142310017
PLCXD302000
PLK45201520
RBBP44136145400
SH3KBP121357010
SLC22A1701000
TAP15179024
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 47
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AGR236422702
ATP5F1A9871211
ATP5F1B101476115
BMI114188805
CALR7644437
CALR3105006
CALU102220
CUL3404577120
DNAJC30019015
DPP40613700
EDEM1001900
EFEMP12271300
ENO1567851
ERN1341221
ERO1A261000
ERO1B00502
ESR1345947900
EZH2161623670
FAM20C03101
HSP90AB1651461872219
HSP90B18579167
HSPA538322682586
IGF1R162373115
INSR161854016
LMAN1343354
MAPT111918800
MYC6690126920
NEK710651417
P4HA11227210
P4HA235640
PDIA202400
PDIA44860214
PHB12713010
PLD3032300
PLD600900
PPIB1172610
PRKN1111140500
PRNP91729400
PTPRN7713021
PTPRO013400
RAF13242196140
SUCO00201
UBQLN1292146350
UQCRC2264201
VCP5756348435
VWF24600
ZBTB252213055
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 8
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CANX130824238124
CPSF6368622120
MED937441499
SAR1B33312611
SNRPF81249219356
TOP14961012591
WASL15232782
YWHAB183933372450
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 3
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
MFAP4010073
PGLYRP3012003
TIMP3213113
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene P4HB is associated with 2 reactions in 2 different subsystems, and present in the compartments: Cytosol, Endoplasmic reticulum. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Isolated Cytosol, Mitochondria, Peroxisome, Endoplasmic reticulum, Extracellular, Nucleus, Golgi apparatus 524 320 1
Arginine and proline metabolism Cytosol, Mitochondria, Extracellular, Peroxisome, Endoplasmic reticulum 58 93 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
P4HB-201 P07237
A0A024R8S5
Enzymes
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
508 aa
57.1 kDa
Yes 0
P4HB-202 H0Y3Z3
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
418 aa
47.4 kDa
Yes 0
P4HB-203 H7BZ94
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
464 aa
52.5 kDa
Yes 0
P4HB-214 I3L4M2
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
537 aa
60.8 kDa
Yes 0
P4HB-216 I3L0S0
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
466 aa
52.5 kDa
Yes 0
P4HB-219 I3L3P5
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
472 aa
53.2 kDa
Yes 0
P4HB-223 I3L514
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
463 aa
52.4 kDa
Yes 0
P4HB-227 A0A7P0T8X1
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
479 aa
54 kDa
Yes 0
P4HB-236 A0A7P0TB26
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
533 aa
59.7 kDa
Yes 0
P4HB-238 A0A7P0T9D6
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
521 aa
59 kDa
Yes 0
P4HB-241 B3KTQ9
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
185 aa
21.3 kDa
No 0
P4HB-245 A0A7P0T9U6
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
486 aa
54.7 kDa
Yes 0
P4HB-252 A0A7P0TA35
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
542 aa
61 kDa
Yes 0
P4HB-254 A0A7P0T8J3
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
488 aa
54.9 kDa
Yes 0
P4HB-255 A0A7P0TA71
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
557 aa
62 kDa
Yes 0
P4HB-259 A0A7P0T9K9
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
439 aa
49.6 kDa
Yes 0
P4HB-267 A0A7P0T8C0
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
481 aa
54.3 kDa
Yes 0
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo