A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.2
nTPM
Monaco:
52.8
nTPM
Schmiedel:
73.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
HPA sample
nTPM
Memory B-cell nTPM: 5.2
Samples: 6
Max nTPM: 10.3
Min nTPM: 0.4
P10809_1017
10.3
P10809_1025
7.1
P10809_1044
0.4
P10809_1063
3.5
P10809_1092
3.7
P10809_1105
6.4
Naive B-cell nTPM: 3.9
Samples: 6
Max nTPM: 7.2
Min nTPM: 1.6
P10809_1011
7.2
P10809_1029
4.3
P10809_1048
1.6
P10809_1067
3.3
P10809_1091
3.5
P10809_1104
3.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 42.4
Samples: 4
Max nTPM: 43.9
Min nTPM: 41.1
RHH5310_R3677
41.1
RHH5218_R3590
42.1
RHH5247_R3619
42.5
RHH5276_R3648
43.9
Naive B-cell nTPM: 26.8
Samples: 4
Max nTPM: 35.4
Min nTPM: 20.5
RHH5308_R3675
20.5
RHH5216_R3588
21.7
RHH5245_R3617
35.4
RHH5274_R3646
29.6
Non-switched memory B-cell nTPM: 27.8
Samples: 4
Max nTPM: 30.5
Min nTPM: 26.1
RHH5309_R3676
27.6
RHH5217_R3589
26.1
RHH5246_R3618
26.8
RHH5275_R3647
30.5
Plasmablast nTPM: 52.8
Samples: 4
Max nTPM: 58.8
Min nTPM: 46.9
RHH5312_R3679
52.7
RHH5220_R3592
53.0
RHH5249_R3621
46.9
RHH5278_R3650
58.8
Switched memory B-cell nTPM: 41.6
Samples: 4
Max nTPM: 47.1
Min nTPM: 35.4
RHH5311_R3678
35.4
RHH5219_R3591
39.4
RHH5248_R3620
47.1
RHH5277_R3649
44.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.6
Schmiedel sample id
TPM
Naive B-cell TPM: 73.6
Samples: 91
Max TPM: 109.7
Min TPM: 40.3
B_CELL_NAIVE_1
109.7
B_CELL_NAIVE_2
102.1
B_CELL_NAIVE_3
100.6
B_CELL_NAIVE_4
98.5
B_CELL_NAIVE_5
95.5
B_CELL_NAIVE_6
94.1
B_CELL_NAIVE_7
93.7
B_CELL_NAIVE_8
93.5
B_CELL_NAIVE_9
93.1
B_CELL_NAIVE_10
92.6
B_CELL_NAIVE_11
91.1
B_CELL_NAIVE_12
90.2
B_CELL_NAIVE_13
90.2
B_CELL_NAIVE_14
90.1
B_CELL_NAIVE_15
89.9
B_CELL_NAIVE_16
89.6
B_CELL_NAIVE_17
89.5
B_CELL_NAIVE_18
87.8
B_CELL_NAIVE_19
87.3
B_CELL_NAIVE_20
87.3
B_CELL_NAIVE_21
86.8
B_CELL_NAIVE_22
85.9
B_CELL_NAIVE_23
85.4
B_CELL_NAIVE_24
84.9
B_CELL_NAIVE_25
84.8
B_CELL_NAIVE_26
84.2
B_CELL_NAIVE_27
83.8
B_CELL_NAIVE_28
82.8
B_CELL_NAIVE_29
82.6
B_CELL_NAIVE_30
82.4
B_CELL_NAIVE_31
82.3
B_CELL_NAIVE_32
81.0
B_CELL_NAIVE_33
80.9
B_CELL_NAIVE_34
80.8
B_CELL_NAIVE_35
79.4
B_CELL_NAIVE_36
79.0
B_CELL_NAIVE_37
78.0
B_CELL_NAIVE_38
77.5
B_CELL_NAIVE_39
77.3
B_CELL_NAIVE_40
77.1
B_CELL_NAIVE_41
76.3
B_CELL_NAIVE_42
75.3
B_CELL_NAIVE_43
75.0
B_CELL_NAIVE_44
75.0
B_CELL_NAIVE_45
74.4
B_CELL_NAIVE_46
74.2
B_CELL_NAIVE_47
74.0
B_CELL_NAIVE_48
72.9
B_CELL_NAIVE_49
72.6
B_CELL_NAIVE_50
72.1
B_CELL_NAIVE_51
71.6
B_CELL_NAIVE_52
70.1
B_CELL_NAIVE_53
69.5
B_CELL_NAIVE_54
69.5
B_CELL_NAIVE_55
69.2
B_CELL_NAIVE_56
67.0
B_CELL_NAIVE_57
66.8
B_CELL_NAIVE_58
65.7
B_CELL_NAIVE_59
64.9
B_CELL_NAIVE_60
64.8
B_CELL_NAIVE_61
64.7
B_CELL_NAIVE_62
64.7
B_CELL_NAIVE_63
64.4
B_CELL_NAIVE_64
64.4
B_CELL_NAIVE_65
64.0
B_CELL_NAIVE_66
64.0
B_CELL_NAIVE_67
63.3
B_CELL_NAIVE_68
62.4
B_CELL_NAIVE_69
62.1
B_CELL_NAIVE_70
61.1
B_CELL_NAIVE_71
61.0
B_CELL_NAIVE_72
60.9
B_CELL_NAIVE_73
60.8
B_CELL_NAIVE_74
60.6
B_CELL_NAIVE_75
60.4
B_CELL_NAIVE_76
60.1
B_CELL_NAIVE_77
58.5
B_CELL_NAIVE_78
57.5
B_CELL_NAIVE_79
57.3
B_CELL_NAIVE_80
56.6
B_CELL_NAIVE_81
56.4
B_CELL_NAIVE_82
55.4
B_CELL_NAIVE_83
54.8
B_CELL_NAIVE_84
54.8
B_CELL_NAIVE_85
51.2
B_CELL_NAIVE_86
50.0
B_CELL_NAIVE_87
48.8
B_CELL_NAIVE_88
48.7
B_CELL_NAIVE_89
46.3
B_CELL_NAIVE_90
42.1
B_CELL_NAIVE_91
40.3
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