A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.4
nTPM
Monaco:
57.5
nTPM
Schmiedel:
144.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
HPA sample
nTPM
Classical monocyte nTPM: 4.5
Samples: 6
Max nTPM: 7.5
Min nTPM: 2.6
P10809_1003
7.5
P10809_1020
5.7
P10809_1039
2.6
P10809_1058
3.2
P10809_1080
4.2
P10809_1107
3.9
Intermediate monocyte nTPM: 7.6
Samples: 6
Max nTPM: 13.4
Min nTPM: 5.1
P10809_1004
13.4
P10809_1023
5.4
P10809_1042
7.9
P10809_1061
7.7
P10809_1081
5.1
P10809_1108
6.2
Non-classical monocyte nTPM: 15.3
Samples: 5
Max nTPM: 31.7
Min nTPM: 7.0
P10809_1005
19.4
P10809_1053
10.7
P10809_1072
31.7
P10809_1082
7.0
P10809_1109
7.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.5
Monaco sample
nTPM
Classical monocyte nTPM: 24.8
Samples: 4
Max nTPM: 26.1
Min nTPM: 21.1
RHH5313_R3680
26.0
RHH5221_R3593
25.8
RHH5250_R3622
26.1
RHH5279_R3651
21.1
Intermediate monocyte nTPM: 43.4
Samples: 4
Max nTPM: 62.4
Min nTPM: 32.1
RHH5314_R3681
40.1
RHH5222_R3594
62.4
RHH5251_R3623
38.8
RHH5280_R3652
32.1
Non-classical monocyte nTPM: 57.5
Samples: 4
Max nTPM: 78.0
Min nTPM: 46.6
RHH5315_R3682
51.3
RHH5223_R3595
78.0
RHH5252_R3624
54.1
RHH5281_R3653
46.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.4
Schmiedel sample id
TPM
Classical monocyte TPM: 58.4
Samples: 91
Max TPM: 86.7
Min TPM: 29.2
MONOCYTES_1
86.7
MONOCYTES_2
81.2
MONOCYTES_3
79.1
MONOCYTES_4
75.9
MONOCYTES_5
75.4
MONOCYTES_6
73.8
MONOCYTES_7
73.6
MONOCYTES_8
72.2
MONOCYTES_9
72.1
MONOCYTES_10
70.3
MONOCYTES_11
70.3
MONOCYTES_12
70.1
MONOCYTES_13
69.9
MONOCYTES_14
69.1
MONOCYTES_15
68.6
MONOCYTES_16
68.5
MONOCYTES_17
68.0
MONOCYTES_18
67.2
MONOCYTES_19
65.8
MONOCYTES_20
65.7
MONOCYTES_21
65.2
MONOCYTES_22
65.1
MONOCYTES_23
64.6
MONOCYTES_24
64.1
MONOCYTES_25
63.9
MONOCYTES_26
63.1
MONOCYTES_27
62.9
MONOCYTES_28
62.6
MONOCYTES_29
62.5
MONOCYTES_30
62.3
MONOCYTES_31
62.2
MONOCYTES_32
61.8
MONOCYTES_33
61.7
MONOCYTES_34
61.4
MONOCYTES_35
61.0
MONOCYTES_36
61.0
MONOCYTES_37
60.9
MONOCYTES_38
60.8
MONOCYTES_39
60.5
MONOCYTES_40
59.6
MONOCYTES_41
59.4
MONOCYTES_42
59.3
MONOCYTES_43
58.0
MONOCYTES_44
57.6
MONOCYTES_45
57.2
MONOCYTES_46
57.2
MONOCYTES_47
57.2
MONOCYTES_48
56.9
MONOCYTES_49
56.1
MONOCYTES_50
56.0
MONOCYTES_51
55.8
MONOCYTES_52
55.7
MONOCYTES_53
55.7
MONOCYTES_54
55.6
MONOCYTES_55
55.5
MONOCYTES_56
55.2
MONOCYTES_57
54.7
MONOCYTES_58
54.6
MONOCYTES_59
54.4
MONOCYTES_60
53.9
MONOCYTES_61
53.9
MONOCYTES_62
53.8
MONOCYTES_63
53.4
MONOCYTES_64
53.2
MONOCYTES_65
52.0
MONOCYTES_66
51.9
MONOCYTES_67
51.7
MONOCYTES_68
51.5
MONOCYTES_69
50.9
MONOCYTES_70
50.8
MONOCYTES_71
50.7
MONOCYTES_72
50.4
MONOCYTES_73
50.2
MONOCYTES_74
50.0
MONOCYTES_75
49.9
MONOCYTES_76
49.3
MONOCYTES_77
49.3
MONOCYTES_78
49.2
MONOCYTES_79
49.1
MONOCYTES_80
48.4
MONOCYTES_81
48.0
MONOCYTES_82
48.0
MONOCYTES_83
47.5
MONOCYTES_84
47.3
MONOCYTES_85
46.2
MONOCYTES_86
45.5
MONOCYTES_87
44.2
MONOCYTES_88
43.1
MONOCYTES_89
42.3
MONOCYTES_90
40.0
MONOCYTES_91
29.2
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Non-classical monocyte TPM: 144.4
Samples: 90
Max TPM: 201.7
Min TPM: 87.5
M2_1
201.7
M2_2
197.5
M2_3
186.2
M2_4
185.5
M2_5
179.8
M2_6
177.4
M2_7
174.8
M2_8
173.4
M2_9
173.3
M2_10
173.1
M2_11
172.7
M2_12
171.2
M2_13
170.8
M2_14
170.2
M2_15
169.6
M2_16
168.2
M2_17
168.1
M2_18
168.0
M2_19
167.4
M2_20
165.8
M2_21
164.4
M2_22
163.2
M2_23
162.5
M2_24
160.7
M2_25
160.4
M2_26
160.1
M2_27
159.8
M2_28
159.1
M2_29
158.9
M2_30
158.2
M2_31
157.7
M2_32
157.6
M2_33
155.6
M2_34
154.9
M2_35
154.7
M2_36
153.8
M2_37
153.5
M2_38
152.5
M2_39
151.6
M2_40
150.7
M2_41
149.7
M2_42
149.0
M2_43
148.7
M2_44
147.9
M2_45
147.7
M2_46
146.6
M2_47
145.3
M2_48
144.5
M2_49
143.4
M2_50
143.3
M2_51
142.8
M2_52
139.5
M2_53
137.9
M2_54
137.8
M2_55
137.1
M2_56
137.1
M2_57
136.4
M2_58
136.2
M2_59
136.1
M2_60
134.6
M2_61
133.6
M2_62
132.2
M2_63
131.8
M2_64
131.5
M2_65
131.5
M2_66
131.0
M2_67
130.1
M2_68
129.1
M2_69
128.0
M2_70
124.9
M2_71
119.7
M2_72
119.3
M2_73
118.1
M2_74
117.1
M2_75
116.0
M2_76
114.7
M2_77
114.5
M2_78
114.5
M2_79
114.2
M2_80
110.9
M2_81
109.5
M2_82
108.4
M2_83
108.4
M2_84
107.9
M2_85
106.3
M2_86
106.2
M2_87
102.6
M2_88
100.8
M2_89
92.0
M2_90
87.5
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