A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.7
nTPM
Monaco:
113.8
nTPM
Schmiedel:
362.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
HPA sample
nTPM
NK-cell nTPM: 12.7
Samples: 6
Max nTPM: 18.4
Min nTPM: 4.8
P10809_1013
18.4
P10809_1033
12.4
P10809_1052
14.5
P10809_1071
12.8
P10809_1093
4.8
P10809_1103
13.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.8
Monaco sample
nTPM
NK-cell nTPM: 113.8
Samples: 4
Max nTPM: 123.2
Min nTPM: 102.7
RHH5316_R3683
123.2
RHH5224_R3596
110.6
RHH5253_R3625
118.8
RHH5282_R3654
102.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
362.6
Schmiedel sample id
TPM
NK-cell TPM: 362.6
Samples: 90
Max TPM: 621.8
Min TPM: 201.3
NK_1
621.8
NK_2
566.1
NK_3
558.6
NK_4
554.7
NK_5
515.8
NK_6
506.7
NK_7
496.0
NK_8
490.7
NK_9
477.9
NK_10
475.1
NK_11
465.2
NK_12
458.9
NK_13
458.5
NK_14
455.9
NK_15
449.3
NK_16
449.1
NK_17
445.4
NK_18
437.7
NK_19
431.4
NK_20
431.1
NK_21
420.0
NK_22
417.0
NK_23
415.3
NK_24
415.3
NK_25
405.8
NK_26
405.0
NK_27
404.6
NK_28
397.9
NK_29
396.0
NK_30
392.8
NK_31
391.3
NK_32
388.5
NK_33
387.6
NK_34
386.3
NK_35
386.1
NK_36
383.8
NK_37
373.9
NK_38
369.4
NK_39
368.0
NK_40
366.4
NK_41
365.5
NK_42
363.8
NK_43
361.4
NK_44
360.9
NK_45
358.8
NK_46
357.8
NK_47
353.1
NK_48
351.6
NK_49
347.9
NK_50
344.7
NK_51
344.3
NK_52
342.9
NK_53
339.1
NK_54
338.6
NK_55
336.5
NK_56
333.7
NK_57
332.9
NK_58
332.2
NK_59
329.1
NK_60
324.7
NK_61
319.0
NK_62
317.7
NK_63
316.2
NK_64
316.1
NK_65
314.8
NK_66
305.4
NK_67
300.2
NK_68
293.0
NK_69
292.2
NK_70
289.4
NK_71
287.4
NK_72
281.7
NK_73
281.2
NK_74
273.3
NK_75
272.6
NK_76
269.2
NK_77
267.4
NK_78
265.4
NK_79
263.9
NK_80
260.7
NK_81
257.3
NK_82
249.7
NK_83
249.1
NK_84
248.6
NK_85
246.6
NK_86
229.2
NK_87
212.7
NK_88
210.5
NK_89
208.6
NK_90
201.3
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