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BETA
  • SUMMARY

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  • RPS23
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:1954.3 nTPM
Monaco:253.2 nTPM
Schmiedel:294.7 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1954.3
HPA sample nTPM
Memory B-cell
nTPM: 1954.3
Samples: 6

Max nTPM: 2550.5
Min nTPM: 1731.2
P10809_1017 1933.1
P10809_1025 1871.3
P10809_1044 2550.5
P10809_1063 1787.4
P10809_1092 1731.2
P10809_1105 1852.0
Naive B-cell
nTPM: 1744.6
Samples: 6

Max nTPM: 1970.8
Min nTPM: 1598.2
P10809_1011 1726.8
P10809_1029 1598.2
P10809_1048 1970.8
P10809_1067 1620.6
P10809_1091 1731.2
P10809_1104 1820.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

253.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 218.3
Samples: 4

Max nTPM: 289.1
Min nTPM: 75.7
RHH5310_R3677 238.3
RHH5218_R3590 75.7
RHH5247_R3619 269.9
RHH5276_R3648 289.1
Naive B-cell
nTPM: 253.2
Samples: 4

Max nTPM: 405.8
Min nTPM: 115.7
RHH5308_R3675 278.4
RHH5216_R3588 115.7
RHH5245_R3617 405.8
RHH5274_R3646 213.0
Non-switched memory B-cell
nTPM: 198.8
Samples: 4

Max nTPM: 314.9
Min nTPM: 112.0
RHH5309_R3676 253.5
RHH5217_R3589 114.9
RHH5246_R3618 112.0
RHH5275_R3647 314.9
Plasmablast
nTPM: 154.6
Samples: 4

Max nTPM: 196.5
Min nTPM: 75.0
RHH5312_R3679 185.1
RHH5220_R3592 75.0
RHH5249_R3621 196.5
RHH5278_R3650 161.6
Switched memory B-cell
nTPM: 201.2
Samples: 4

Max nTPM: 228.2
Min nTPM: 166.7
RHH5311_R3678 228.2
RHH5219_R3591 182.3
RHH5248_R3620 166.7
RHH5277_R3649 227.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

294.7
Schmiedel sample id TPM
Naive B-cell
TPM: 294.7
Samples: 91

Max TPM: 414.3
Min TPM: 132.6
B_CELL_NAIVE_1 414.3
B_CELL_NAIVE_2 385.7
B_CELL_NAIVE_3 384.4
B_CELL_NAIVE_4 374.0
B_CELL_NAIVE_5 367.8
B_CELL_NAIVE_6 363.7
B_CELL_NAIVE_7 358.8
B_CELL_NAIVE_8 354.8
B_CELL_NAIVE_9 353.9
B_CELL_NAIVE_10 352.2
B_CELL_NAIVE_11 351.7
B_CELL_NAIVE_12 349.4
B_CELL_NAIVE_13 348.9
B_CELL_NAIVE_14 346.5
B_CELL_NAIVE_15 342.6
B_CELL_NAIVE_16 342.4
B_CELL_NAIVE_17 342.1
B_CELL_NAIVE_18 341.8
B_CELL_NAIVE_19 340.1
B_CELL_NAIVE_20 339.7
B_CELL_NAIVE_21 339.2
B_CELL_NAIVE_22 336.5
B_CELL_NAIVE_23 333.9
B_CELL_NAIVE_24 332.8
B_CELL_NAIVE_25 329.7
B_CELL_NAIVE_26 329.3
B_CELL_NAIVE_27 327.9
B_CELL_NAIVE_28 326.8
B_CELL_NAIVE_29 325.5
B_CELL_NAIVE_30 325.2
B_CELL_NAIVE_31 325.1
B_CELL_NAIVE_32 319.6
B_CELL_NAIVE_33 314.2
B_CELL_NAIVE_34 313.0
B_CELL_NAIVE_35 312.7
B_CELL_NAIVE_36 311.1
B_CELL_NAIVE_37 309.7
B_CELL_NAIVE_38 309.2
B_CELL_NAIVE_39 307.5
B_CELL_NAIVE_40 306.4
B_CELL_NAIVE_41 305.1
B_CELL_NAIVE_42 305.0
B_CELL_NAIVE_43 302.0
B_CELL_NAIVE_44 299.9
B_CELL_NAIVE_45 299.1
B_CELL_NAIVE_46 299.0
B_CELL_NAIVE_47 297.1
B_CELL_NAIVE_48 296.4
B_CELL_NAIVE_49 295.3
B_CELL_NAIVE_50 294.7
B_CELL_NAIVE_51 289.8
B_CELL_NAIVE_52 288.0
B_CELL_NAIVE_53 287.4
B_CELL_NAIVE_54 283.4
B_CELL_NAIVE_55 283.3
B_CELL_NAIVE_56 281.3
B_CELL_NAIVE_57 279.0
B_CELL_NAIVE_58 277.9
B_CELL_NAIVE_59 277.8
B_CELL_NAIVE_60 277.5
B_CELL_NAIVE_61 275.1
B_CELL_NAIVE_62 267.8
B_CELL_NAIVE_63 266.6
B_CELL_NAIVE_64 265.3
B_CELL_NAIVE_65 262.1
B_CELL_NAIVE_66 261.5
B_CELL_NAIVE_67 260.5
B_CELL_NAIVE_68 259.6
B_CELL_NAIVE_69 256.7
B_CELL_NAIVE_70 256.2
B_CELL_NAIVE_71 252.0
B_CELL_NAIVE_72 249.8
B_CELL_NAIVE_73 246.3
B_CELL_NAIVE_74 246.1
B_CELL_NAIVE_75 245.5
B_CELL_NAIVE_76 245.5
B_CELL_NAIVE_77 242.7
B_CELL_NAIVE_78 242.7
B_CELL_NAIVE_79 241.5
B_CELL_NAIVE_80 240.0
B_CELL_NAIVE_81 237.6
B_CELL_NAIVE_82 236.3
B_CELL_NAIVE_83 232.3
B_CELL_NAIVE_84 230.6
B_CELL_NAIVE_85 229.7
B_CELL_NAIVE_86 226.6
B_CELL_NAIVE_87 204.3
B_CELL_NAIVE_88 202.9
B_CELL_NAIVE_89 199.6
B_CELL_NAIVE_90 195.4
B_CELL_NAIVE_91 132.6
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