A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1954.3
nTPM
Monaco:
253.2
nTPM
Schmiedel:
294.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1954.3
HPA sample
nTPM
Memory B-cell nTPM: 1954.3
Samples: 6
Max nTPM: 2550.5
Min nTPM: 1731.2
P10809_1017
1933.1
P10809_1025
1871.3
P10809_1044
2550.5
P10809_1063
1787.4
P10809_1092
1731.2
P10809_1105
1852.0
Naive B-cell nTPM: 1744.6
Samples: 6
Max nTPM: 1970.8
Min nTPM: 1598.2
P10809_1011
1726.8
P10809_1029
1598.2
P10809_1048
1970.8
P10809_1067
1620.6
P10809_1091
1731.2
P10809_1104
1820.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
253.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 218.3
Samples: 4
Max nTPM: 289.1
Min nTPM: 75.7
RHH5310_R3677
238.3
RHH5218_R3590
75.7
RHH5247_R3619
269.9
RHH5276_R3648
289.1
Naive B-cell nTPM: 253.2
Samples: 4
Max nTPM: 405.8
Min nTPM: 115.7
RHH5308_R3675
278.4
RHH5216_R3588
115.7
RHH5245_R3617
405.8
RHH5274_R3646
213.0
Non-switched memory B-cell nTPM: 198.8
Samples: 4
Max nTPM: 314.9
Min nTPM: 112.0
RHH5309_R3676
253.5
RHH5217_R3589
114.9
RHH5246_R3618
112.0
RHH5275_R3647
314.9
Plasmablast nTPM: 154.6
Samples: 4
Max nTPM: 196.5
Min nTPM: 75.0
RHH5312_R3679
185.1
RHH5220_R3592
75.0
RHH5249_R3621
196.5
RHH5278_R3650
161.6
Switched memory B-cell nTPM: 201.2
Samples: 4
Max nTPM: 228.2
Min nTPM: 166.7
RHH5311_R3678
228.2
RHH5219_R3591
182.3
RHH5248_R3620
166.7
RHH5277_R3649
227.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
294.7
Schmiedel sample id
TPM
Naive B-cell TPM: 294.7
Samples: 91
Max TPM: 414.3
Min TPM: 132.6
B_CELL_NAIVE_1
414.3
B_CELL_NAIVE_2
385.7
B_CELL_NAIVE_3
384.4
B_CELL_NAIVE_4
374.0
B_CELL_NAIVE_5
367.8
B_CELL_NAIVE_6
363.7
B_CELL_NAIVE_7
358.8
B_CELL_NAIVE_8
354.8
B_CELL_NAIVE_9
353.9
B_CELL_NAIVE_10
352.2
B_CELL_NAIVE_11
351.7
B_CELL_NAIVE_12
349.4
B_CELL_NAIVE_13
348.9
B_CELL_NAIVE_14
346.5
B_CELL_NAIVE_15
342.6
B_CELL_NAIVE_16
342.4
B_CELL_NAIVE_17
342.1
B_CELL_NAIVE_18
341.8
B_CELL_NAIVE_19
340.1
B_CELL_NAIVE_20
339.7
B_CELL_NAIVE_21
339.2
B_CELL_NAIVE_22
336.5
B_CELL_NAIVE_23
333.9
B_CELL_NAIVE_24
332.8
B_CELL_NAIVE_25
329.7
B_CELL_NAIVE_26
329.3
B_CELL_NAIVE_27
327.9
B_CELL_NAIVE_28
326.8
B_CELL_NAIVE_29
325.5
B_CELL_NAIVE_30
325.2
B_CELL_NAIVE_31
325.1
B_CELL_NAIVE_32
319.6
B_CELL_NAIVE_33
314.2
B_CELL_NAIVE_34
313.0
B_CELL_NAIVE_35
312.7
B_CELL_NAIVE_36
311.1
B_CELL_NAIVE_37
309.7
B_CELL_NAIVE_38
309.2
B_CELL_NAIVE_39
307.5
B_CELL_NAIVE_40
306.4
B_CELL_NAIVE_41
305.1
B_CELL_NAIVE_42
305.0
B_CELL_NAIVE_43
302.0
B_CELL_NAIVE_44
299.9
B_CELL_NAIVE_45
299.1
B_CELL_NAIVE_46
299.0
B_CELL_NAIVE_47
297.1
B_CELL_NAIVE_48
296.4
B_CELL_NAIVE_49
295.3
B_CELL_NAIVE_50
294.7
B_CELL_NAIVE_51
289.8
B_CELL_NAIVE_52
288.0
B_CELL_NAIVE_53
287.4
B_CELL_NAIVE_54
283.4
B_CELL_NAIVE_55
283.3
B_CELL_NAIVE_56
281.3
B_CELL_NAIVE_57
279.0
B_CELL_NAIVE_58
277.9
B_CELL_NAIVE_59
277.8
B_CELL_NAIVE_60
277.5
B_CELL_NAIVE_61
275.1
B_CELL_NAIVE_62
267.8
B_CELL_NAIVE_63
266.6
B_CELL_NAIVE_64
265.3
B_CELL_NAIVE_65
262.1
B_CELL_NAIVE_66
261.5
B_CELL_NAIVE_67
260.5
B_CELL_NAIVE_68
259.6
B_CELL_NAIVE_69
256.7
B_CELL_NAIVE_70
256.2
B_CELL_NAIVE_71
252.0
B_CELL_NAIVE_72
249.8
B_CELL_NAIVE_73
246.3
B_CELL_NAIVE_74
246.1
B_CELL_NAIVE_75
245.5
B_CELL_NAIVE_76
245.5
B_CELL_NAIVE_77
242.7
B_CELL_NAIVE_78
242.7
B_CELL_NAIVE_79
241.5
B_CELL_NAIVE_80
240.0
B_CELL_NAIVE_81
237.6
B_CELL_NAIVE_82
236.3
B_CELL_NAIVE_83
232.3
B_CELL_NAIVE_84
230.6
B_CELL_NAIVE_85
229.7
B_CELL_NAIVE_86
226.6
B_CELL_NAIVE_87
204.3
B_CELL_NAIVE_88
202.9
B_CELL_NAIVE_89
199.6
B_CELL_NAIVE_90
195.4
B_CELL_NAIVE_91
132.6
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