A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
945.9
nTPM
Monaco:
85.7
nTPM
Schmiedel:
176.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
945.9
HPA sample
nTPM
NK-cell nTPM: 945.9
Samples: 6
Max nTPM: 1119.7
Min nTPM: 404.1
P10809_1013
1068.2
P10809_1033
1063.8
P10809_1052
1119.7
P10809_1071
1050.6
P10809_1093
404.1
P10809_1103
968.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.7
Monaco sample
nTPM
NK-cell nTPM: 85.7
Samples: 4
Max nTPM: 109.9
Min nTPM: 72.9
RHH5316_R3683
109.9
RHH5224_R3596
72.9
RHH5253_R3625
74.9
RHH5282_R3654
85.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.4
Schmiedel sample id
TPM
NK-cell TPM: 176.4
Samples: 90
Max TPM: 290.5
Min TPM: 107.2
NK_1
290.5
NK_2
261.9
NK_3
243.1
NK_4
232.5
NK_5
224.3
NK_6
223.7
NK_7
222.0
NK_8
222.0
NK_9
217.4
NK_10
213.9
NK_11
208.3
NK_12
207.6
NK_13
205.5
NK_14
205.3
NK_15
204.1
NK_16
203.5
NK_17
203.5
NK_18
201.9
NK_19
200.8
NK_20
200.6
NK_21
199.6
NK_22
198.1
NK_23
197.1
NK_24
195.6
NK_25
194.8
NK_26
194.2
NK_27
192.1
NK_28
192.0
NK_29
191.9
NK_30
191.6
NK_31
191.4
NK_32
191.3
NK_33
189.8
NK_34
189.4
NK_35
187.4
NK_36
186.8
NK_37
186.3
NK_38
181.7
NK_39
181.1
NK_40
179.9
NK_41
179.3
NK_42
177.9
NK_43
175.7
NK_44
175.7
NK_45
175.5
NK_46
175.1
NK_47
174.9
NK_48
173.2
NK_49
173.1
NK_50
171.9
NK_51
169.1
NK_52
168.5
NK_53
168.3
NK_54
167.9
NK_55
167.2
NK_56
165.1
NK_57
164.7
NK_58
164.1
NK_59
163.7
NK_60
162.6
NK_61
162.4
NK_62
161.9
NK_63
158.0
NK_64
157.3
NK_65
157.3
NK_66
156.9
NK_67
156.5
NK_68
154.4
NK_69
154.1
NK_70
153.9
NK_71
153.4
NK_72
153.0
NK_73
153.0
NK_74
149.2
NK_75
149.0
NK_76
145.0
NK_77
144.2
NK_78
142.5
NK_79
132.8
NK_80
132.0
NK_81
131.1
NK_82
129.5
NK_83
128.9
NK_84
128.5
NK_85
125.0
NK_86
124.0
NK_87
123.6
NK_88
116.5
NK_89
116.1
NK_90
107.2
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