A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
857.4
nTPM
Monaco:
133.7
nTPM
Schmiedel:
159.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
857.4
HPA sample
nTPM
Classical monocyte nTPM: 857.5
Samples: 6
Max nTPM: 1714.0
Min nTPM: 466.9
P10809_1003
1714.0
P10809_1020
653.6
P10809_1039
780.8
P10809_1058
689.9
P10809_1080
466.9
P10809_1107
839.6
Intermediate monocyte nTPM: 764.4
Samples: 6
Max nTPM: 1113.0
Min nTPM: 531.9
P10809_1004
612.3
P10809_1023
847.9
P10809_1042
890.2
P10809_1061
531.9
P10809_1081
591.4
P10809_1108
1113.0
Non-classical monocyte nTPM: 650.0
Samples: 5
Max nTPM: 812.6
Min nTPM: 491.6
P10809_1005
764.4
P10809_1053
657.5
P10809_1072
491.6
P10809_1082
524.0
P10809_1109
812.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.7
Monaco sample
nTPM
Classical monocyte nTPM: 84.5
Samples: 4
Max nTPM: 99.6
Min nTPM: 64.7
RHH5313_R3680
99.6
RHH5221_R3593
64.7
RHH5250_R3622
92.2
RHH5279_R3651
81.4
Intermediate monocyte nTPM: 133.7
Samples: 4
Max nTPM: 146.7
Min nTPM: 104.5
RHH5314_R3681
146.7
RHH5222_R3594
146.7
RHH5251_R3623
137.0
RHH5280_R3652
104.5
Non-classical monocyte nTPM: 98.6
Samples: 4
Max nTPM: 124.5
Min nTPM: 56.7
RHH5315_R3682
124.5
RHH5223_R3595
96.5
RHH5252_R3624
116.8
RHH5281_R3653
56.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
159.9
Schmiedel sample id
TPM
Classical monocyte TPM: 159.9
Samples: 91
Max TPM: 208.3
Min TPM: 110.4
MONOCYTES_1
208.3
MONOCYTES_2
199.7
MONOCYTES_3
197.9
MONOCYTES_4
197.5
MONOCYTES_5
197.3
MONOCYTES_6
194.1
MONOCYTES_7
194.1
MONOCYTES_8
193.8
MONOCYTES_9
193.1
MONOCYTES_10
192.9
MONOCYTES_11
188.5
MONOCYTES_12
185.6
MONOCYTES_13
184.9
MONOCYTES_14
183.7
MONOCYTES_15
183.0
MONOCYTES_16
181.9
MONOCYTES_17
181.6
MONOCYTES_18
181.1
MONOCYTES_19
180.2
MONOCYTES_20
177.9
MONOCYTES_21
176.2
MONOCYTES_22
175.2
MONOCYTES_23
173.8
MONOCYTES_24
173.6
MONOCYTES_25
173.6
MONOCYTES_26
173.6
MONOCYTES_27
173.5
MONOCYTES_28
172.5
MONOCYTES_29
171.3
MONOCYTES_30
170.4
MONOCYTES_31
170.2
MONOCYTES_32
169.4
MONOCYTES_33
169.2
MONOCYTES_34
168.7
MONOCYTES_35
168.2
MONOCYTES_36
166.5
MONOCYTES_37
166.4
MONOCYTES_38
165.4
MONOCYTES_39
165.3
MONOCYTES_40
165.2
MONOCYTES_41
164.8
MONOCYTES_42
164.4
MONOCYTES_43
164.4
MONOCYTES_44
164.1
MONOCYTES_45
163.6
MONOCYTES_46
163.3
MONOCYTES_47
163.3
MONOCYTES_48
163.1
MONOCYTES_49
161.6
MONOCYTES_50
161.4
MONOCYTES_51
159.3
MONOCYTES_52
158.5
MONOCYTES_53
158.4
MONOCYTES_54
157.3
MONOCYTES_55
156.6
MONOCYTES_56
156.4
MONOCYTES_57
156.1
MONOCYTES_58
155.7
MONOCYTES_59
153.5
MONOCYTES_60
153.1
MONOCYTES_61
151.9
MONOCYTES_62
151.5
MONOCYTES_63
148.6
MONOCYTES_64
148.1
MONOCYTES_65
146.5
MONOCYTES_66
146.4
MONOCYTES_67
146.3
MONOCYTES_68
146.0
MONOCYTES_69
144.7
MONOCYTES_70
142.3
MONOCYTES_71
141.3
MONOCYTES_72
141.0
MONOCYTES_73
139.3
MONOCYTES_74
138.4
MONOCYTES_75
138.0
MONOCYTES_76
137.7
MONOCYTES_77
137.2
MONOCYTES_78
136.7
MONOCYTES_79
127.2
MONOCYTES_80
125.2
MONOCYTES_81
125.1
MONOCYTES_82
124.4
MONOCYTES_83
124.1
MONOCYTES_84
123.1
MONOCYTES_85
121.5
MONOCYTES_86
118.7
MONOCYTES_87
118.6
MONOCYTES_88
116.2
MONOCYTES_89
116.1
MONOCYTES_90
112.7
MONOCYTES_91
110.4
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Non-classical monocyte TPM: 136.9
Samples: 90
Max TPM: 198.2
Min TPM: 78.9
M2_1
198.2
M2_2
196.0
M2_3
187.7
M2_4
181.4
M2_5
180.0
M2_6
175.0
M2_7
172.6
M2_8
172.0
M2_9
168.5
M2_10
167.0
M2_11
166.0
M2_12
165.5
M2_13
165.0
M2_14
163.8
M2_15
162.8
M2_16
162.4
M2_17
160.6
M2_18
159.5
M2_19
157.7
M2_20
157.7
M2_21
157.6
M2_22
155.6
M2_23
155.5
M2_24
155.2
M2_25
153.2
M2_26
152.5
M2_27
152.4
M2_28
150.0
M2_29
149.4
M2_30
148.4
M2_31
147.5
M2_32
147.1
M2_33
147.1
M2_34
147.1
M2_35
146.9
M2_36
146.1
M2_37
145.3
M2_38
144.9
M2_39
142.3
M2_40
142.3
M2_41
141.3
M2_42
140.8
M2_43
139.8
M2_44
139.2
M2_45
137.6
M2_46
137.0
M2_47
136.2
M2_48
135.5
M2_49
135.3
M2_50
135.1
M2_51
134.2
M2_52
133.8
M2_53
133.4
M2_54
132.4
M2_55
130.9
M2_56
130.2
M2_57
129.9
M2_58
128.7
M2_59
128.3
M2_60
127.6
M2_61
126.4
M2_62
125.7
M2_63
125.1
M2_64
122.8
M2_65
122.3
M2_66
120.9
M2_67
120.6
M2_68
115.4
M2_69
114.5
M2_70
114.2
M2_71
112.6
M2_72
110.0
M2_73
109.6
M2_74
108.4
M2_75
107.0
M2_76
106.6
M2_77
105.7
M2_78
105.4
M2_79
104.7
M2_80
103.2
M2_81
101.8
M2_82
100.7
M2_83
100.6
M2_84
96.8
M2_85
96.4
M2_86
95.9
M2_87
93.4
M2_88
92.9
M2_89
85.9
M2_90
78.9
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