A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.6
nTPM
Monaco:
58.1
nTPM
Schmiedel:
88.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.6
HPA sample
nTPM
Memory B-cell nTPM: 8.6
Samples: 6
Max nTPM: 17.1
Min nTPM: 4.1
P10809_1017
7.1
P10809_1025
8.0
P10809_1044
17.1
P10809_1063
7.4
P10809_1092
8.0
P10809_1105
4.1
Naive B-cell nTPM: 7.1
Samples: 6
Max nTPM: 11.1
Min nTPM: 4.6
P10809_1011
6.9
P10809_1029
7.4
P10809_1048
11.1
P10809_1067
4.6
P10809_1091
7.9
P10809_1104
5.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 53.2
Samples: 4
Max nTPM: 75.9
Min nTPM: 23.4
RHH5310_R3677
23.4
RHH5218_R3590
75.9
RHH5247_R3619
48.4
RHH5276_R3648
65.1
Naive B-cell nTPM: 58.1
Samples: 4
Max nTPM: 79.3
Min nTPM: 48.7
RHH5308_R3675
50.1
RHH5216_R3588
48.7
RHH5245_R3617
79.3
RHH5274_R3646
54.3
Non-switched memory B-cell nTPM: 54.1
Samples: 4
Max nTPM: 76.3
Min nTPM: 33.2
RHH5309_R3676
33.2
RHH5217_R3589
54.9
RHH5246_R3618
52.0
RHH5275_R3647
76.3
Plasmablast nTPM: 38.0
Samples: 4
Max nTPM: 52.0
Min nTPM: 24.0
RHH5312_R3679
24.4
RHH5220_R3592
52.0
RHH5249_R3621
24.0
RHH5278_R3650
51.4
Switched memory B-cell nTPM: 54.9
Samples: 4
Max nTPM: 70.6
Min nTPM: 25.6
RHH5311_R3678
25.6
RHH5219_R3591
69.9
RHH5248_R3620
53.6
RHH5277_R3649
70.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.5
Schmiedel sample id
TPM
Naive B-cell TPM: 88.5
Samples: 91
Max TPM: 103.1
Min TPM: 73.5
B_CELL_NAIVE_1
103.1
B_CELL_NAIVE_2
103.0
B_CELL_NAIVE_3
101.7
B_CELL_NAIVE_4
100.7
B_CELL_NAIVE_5
100.4
B_CELL_NAIVE_6
98.4
B_CELL_NAIVE_7
97.8
B_CELL_NAIVE_8
97.7
B_CELL_NAIVE_9
97.5
B_CELL_NAIVE_10
97.4
B_CELL_NAIVE_11
97.3
B_CELL_NAIVE_12
97.2
B_CELL_NAIVE_13
96.6
B_CELL_NAIVE_14
96.1
B_CELL_NAIVE_15
96.0
B_CELL_NAIVE_16
94.3
B_CELL_NAIVE_17
94.2
B_CELL_NAIVE_18
94.0
B_CELL_NAIVE_19
93.7
B_CELL_NAIVE_20
93.4
B_CELL_NAIVE_21
93.4
B_CELL_NAIVE_22
93.3
B_CELL_NAIVE_23
93.2
B_CELL_NAIVE_24
92.9
B_CELL_NAIVE_25
92.8
B_CELL_NAIVE_26
92.7
B_CELL_NAIVE_27
92.3
B_CELL_NAIVE_28
91.7
B_CELL_NAIVE_29
91.5
B_CELL_NAIVE_30
91.4
B_CELL_NAIVE_31
91.4
B_CELL_NAIVE_32
91.2
B_CELL_NAIVE_33
91.0
B_CELL_NAIVE_34
90.9
B_CELL_NAIVE_35
90.8
B_CELL_NAIVE_36
90.6
B_CELL_NAIVE_37
90.5
B_CELL_NAIVE_38
90.3
B_CELL_NAIVE_39
90.2
B_CELL_NAIVE_40
89.9
B_CELL_NAIVE_41
89.3
B_CELL_NAIVE_42
89.3
B_CELL_NAIVE_43
89.3
B_CELL_NAIVE_44
89.0
B_CELL_NAIVE_45
89.0
B_CELL_NAIVE_46
88.5
B_CELL_NAIVE_47
88.5
B_CELL_NAIVE_48
88.5
B_CELL_NAIVE_49
88.4
B_CELL_NAIVE_50
88.2
B_CELL_NAIVE_51
88.2
B_CELL_NAIVE_52
88.1
B_CELL_NAIVE_53
87.8
B_CELL_NAIVE_54
87.7
B_CELL_NAIVE_55
87.6
B_CELL_NAIVE_56
86.8
B_CELL_NAIVE_57
86.7
B_CELL_NAIVE_58
86.6
B_CELL_NAIVE_59
86.2
B_CELL_NAIVE_60
85.5
B_CELL_NAIVE_61
85.4
B_CELL_NAIVE_62
85.0
B_CELL_NAIVE_63
84.9
B_CELL_NAIVE_64
84.9
B_CELL_NAIVE_65
84.5
B_CELL_NAIVE_66
83.9
B_CELL_NAIVE_67
83.8
B_CELL_NAIVE_68
83.3
B_CELL_NAIVE_69
83.0
B_CELL_NAIVE_70
82.8
B_CELL_NAIVE_71
82.6
B_CELL_NAIVE_72
82.4
B_CELL_NAIVE_73
82.1
B_CELL_NAIVE_74
82.0
B_CELL_NAIVE_75
81.8
B_CELL_NAIVE_76
81.7
B_CELL_NAIVE_77
81.3
B_CELL_NAIVE_78
81.3
B_CELL_NAIVE_79
80.1
B_CELL_NAIVE_80
80.0
B_CELL_NAIVE_81
79.7
B_CELL_NAIVE_82
79.6
B_CELL_NAIVE_83
79.5
B_CELL_NAIVE_84
79.5
B_CELL_NAIVE_85
79.1
B_CELL_NAIVE_86
78.3
B_CELL_NAIVE_87
78.1
B_CELL_NAIVE_88
76.4
B_CELL_NAIVE_89
74.5
B_CELL_NAIVE_90
73.8
B_CELL_NAIVE_91
73.5
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The Human Protein Atlas project is funded
