A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
84.5
nTPM
Schmiedel:
123.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
NK-cell nTPM: 10.3
Samples: 6
Max nTPM: 18.4
Min nTPM: 0.0
P10809_1013
10.2
P10809_1033
9.0
P10809_1052
18.4
P10809_1071
12.4
P10809_1093
0.0
P10809_1103
12.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.5
Monaco sample
nTPM
NK-cell nTPM: 84.5
Samples: 4
Max nTPM: 96.9
Min nTPM: 75.0
RHH5316_R3683
75.0
RHH5224_R3596
77.1
RHH5253_R3625
96.9
RHH5282_R3654
89.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.4
Schmiedel sample id
TPM
NK-cell TPM: 123.4
Samples: 90
Max TPM: 165.3
Min TPM: 64.9
NK_1
165.3
NK_2
164.3
NK_3
161.8
NK_4
161.6
NK_5
160.1
NK_6
151.6
NK_7
150.9
NK_8
150.2
NK_9
145.9
NK_10
145.6
NK_11
144.9
NK_12
144.1
NK_13
143.5
NK_14
142.6
NK_15
141.3
NK_16
140.4
NK_17
139.4
NK_18
135.5
NK_19
134.6
NK_20
134.6
NK_21
133.8
NK_22
132.7
NK_23
132.2
NK_24
131.9
NK_25
131.6
NK_26
130.9
NK_27
130.9
NK_28
129.1
NK_29
128.0
NK_30
126.9
NK_31
126.5
NK_32
125.7
NK_33
125.3
NK_34
125.2
NK_35
125.2
NK_36
125.1
NK_37
124.2
NK_38
123.4
NK_39
123.4
NK_40
123.4
NK_41
122.9
NK_42
122.7
NK_43
121.9
NK_44
121.8
NK_45
121.8
NK_46
121.6
NK_47
121.0
NK_48
120.3
NK_49
119.9
NK_50
118.6
NK_51
118.5
NK_52
118.4
NK_53
118.1
NK_54
117.9
NK_55
117.8
NK_56
117.8
NK_57
117.3
NK_58
117.3
NK_59
116.7
NK_60
116.7
NK_61
116.4
NK_62
115.9
NK_63
113.7
NK_64
113.6
NK_65
113.2
NK_66
112.7
NK_67
112.2
NK_68
111.9
NK_69
111.8
NK_70
111.6
NK_71
111.6
NK_72
110.6
NK_73
110.1
NK_74
109.7
NK_75
109.7
NK_76
109.4
NK_77
108.6
NK_78
108.3
NK_79
108.1
NK_80
105.7
NK_81
105.2
NK_82
104.1
NK_83
103.8
NK_84
103.3
NK_85
102.3
NK_86
101.5
NK_87
99.8
NK_88
99.5
NK_89
98.5
NK_90
64.9
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