A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.8
nTPM
Monaco:
48.3
nTPM
Schmiedel:
59.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.8
HPA sample
nTPM
Classical monocyte nTPM: 6.1
Samples: 6
Max nTPM: 8.6
Min nTPM: 4.4
P10809_1003
6.5
P10809_1020
6.3
P10809_1039
6.3
P10809_1058
8.6
P10809_1080
4.7
P10809_1107
4.4
Intermediate monocyte nTPM: 6.1
Samples: 6
Max nTPM: 15.1
Min nTPM: 1.4
P10809_1004
7.0
P10809_1023
1.4
P10809_1042
2.7
P10809_1061
15.1
P10809_1081
4.8
P10809_1108
5.3
Non-classical monocyte nTPM: 13.8
Samples: 5
Max nTPM: 48.2
Min nTPM: 3.6
P10809_1005
5.7
P10809_1053
3.7
P10809_1072
48.2
P10809_1082
7.8
P10809_1109
3.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.3
Monaco sample
nTPM
Classical monocyte nTPM: 40.7
Samples: 4
Max nTPM: 48.5
Min nTPM: 32.9
RHH5313_R3680
32.9
RHH5221_R3593
46.5
RHH5250_R3622
48.5
RHH5279_R3651
34.7
Intermediate monocyte nTPM: 41.7
Samples: 4
Max nTPM: 52.9
Min nTPM: 25.1
RHH5314_R3681
25.1
RHH5222_R3594
52.9
RHH5251_R3623
47.7
RHH5280_R3652
41.0
Non-classical monocyte nTPM: 48.3
Samples: 4
Max nTPM: 64.8
Min nTPM: 35.3
RHH5315_R3682
53.2
RHH5223_R3595
35.3
RHH5252_R3624
64.8
RHH5281_R3653
39.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.3
Schmiedel sample id
TPM
Classical monocyte TPM: 36.0
Samples: 91
Max TPM: 45.9
Min TPM: 27.7
MONOCYTES_1
45.9
MONOCYTES_2
43.1
MONOCYTES_3
42.4
MONOCYTES_4
41.4
MONOCYTES_5
41.3
MONOCYTES_6
40.2
MONOCYTES_7
40.2
MONOCYTES_8
40.1
MONOCYTES_9
40.0
MONOCYTES_10
39.9
MONOCYTES_11
39.7
MONOCYTES_12
39.7
MONOCYTES_13
39.7
MONOCYTES_14
39.5
MONOCYTES_15
39.5
MONOCYTES_16
39.5
MONOCYTES_17
39.3
MONOCYTES_18
38.8
MONOCYTES_19
38.8
MONOCYTES_20
38.7
MONOCYTES_21
38.6
MONOCYTES_22
38.5
MONOCYTES_23
38.5
MONOCYTES_24
38.5
MONOCYTES_25
38.5
MONOCYTES_26
38.4
MONOCYTES_27
38.4
MONOCYTES_28
38.3
MONOCYTES_29
38.2
MONOCYTES_30
38.0
MONOCYTES_31
38.0
MONOCYTES_32
37.9
MONOCYTES_33
37.9
MONOCYTES_34
37.8
MONOCYTES_35
37.6
MONOCYTES_36
37.2
MONOCYTES_37
37.0
MONOCYTES_38
36.9
MONOCYTES_39
36.7
MONOCYTES_40
36.6
MONOCYTES_41
36.5
MONOCYTES_42
36.4
MONOCYTES_43
36.3
MONOCYTES_44
36.1
MONOCYTES_45
36.0
MONOCYTES_46
35.9
MONOCYTES_47
35.8
MONOCYTES_48
35.7
MONOCYTES_49
35.7
MONOCYTES_50
35.7
MONOCYTES_51
35.6
MONOCYTES_52
35.5
MONOCYTES_53
35.2
MONOCYTES_54
35.1
MONOCYTES_55
35.1
MONOCYTES_56
35.0
MONOCYTES_57
34.8
MONOCYTES_58
34.8
MONOCYTES_59
34.7
MONOCYTES_60
34.5
MONOCYTES_61
34.5
MONOCYTES_62
34.4
MONOCYTES_63
34.4
MONOCYTES_64
34.4
MONOCYTES_65
34.3
MONOCYTES_66
34.3
MONOCYTES_67
34.2
MONOCYTES_68
34.0
MONOCYTES_69
33.9
MONOCYTES_70
33.7
MONOCYTES_71
33.7
MONOCYTES_72
33.7
MONOCYTES_73
33.6
MONOCYTES_74
33.4
MONOCYTES_75
33.4
MONOCYTES_76
33.2
MONOCYTES_77
33.0
MONOCYTES_78
32.7
MONOCYTES_79
32.6
MONOCYTES_80
32.2
MONOCYTES_81
31.4
MONOCYTES_82
31.3
MONOCYTES_83
30.9
MONOCYTES_84
30.3
MONOCYTES_85
30.1
MONOCYTES_86
29.2
MONOCYTES_87
29.1
MONOCYTES_88
28.7
MONOCYTES_89
27.8
MONOCYTES_90
27.8
MONOCYTES_91
27.7
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Non-classical monocyte TPM: 59.3
Samples: 90
Max TPM: 71.1
Min TPM: 42.0
M2_1
71.1
M2_2
70.5
M2_3
68.8
M2_4
68.7
M2_5
68.0
M2_6
67.8
M2_7
66.6
M2_8
66.4
M2_9
65.8
M2_10
65.5
M2_11
65.4
M2_12
65.2
M2_13
64.9
M2_14
64.5
M2_15
64.4
M2_16
64.2
M2_17
63.6
M2_18
63.4
M2_19
63.2
M2_20
63.1
M2_21
62.9
M2_22
62.8
M2_23
62.7
M2_24
62.6
M2_25
62.6
M2_26
62.2
M2_27
62.0
M2_28
61.7
M2_29
61.1
M2_30
61.0
M2_31
60.9
M2_32
60.5
M2_33
60.5
M2_34
60.2
M2_35
60.1
M2_36
60.1
M2_37
60.0
M2_38
59.9
M2_39
59.8
M2_40
59.7
M2_41
59.7
M2_42
59.7
M2_43
59.3
M2_44
59.2
M2_45
59.1
M2_46
59.1
M2_47
59.0
M2_48
58.9
M2_49
58.9
M2_50
58.6
M2_51
58.6
M2_52
58.5
M2_53
58.5
M2_54
58.3
M2_55
58.0
M2_56
57.9
M2_57
57.9
M2_58
57.8
M2_59
57.4
M2_60
57.2
M2_61
57.2
M2_62
57.1
M2_63
57.0
M2_64
56.8
M2_65
56.8
M2_66
56.6
M2_67
56.4
M2_68
56.2
M2_69
56.1
M2_70
55.9
M2_71
55.8
M2_72
55.7
M2_73
55.5
M2_74
55.3
M2_75
55.3
M2_76
54.5
M2_77
54.3
M2_78
54.0
M2_79
54.0
M2_80
53.7
M2_81
53.0
M2_82
52.4
M2_83
52.1
M2_84
51.8
M2_85
51.2
M2_86
51.0
M2_87
50.8
M2_88
49.9
M2_89
48.9
M2_90
42.0
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