A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
517.8
nTPM
Monaco:
336.4
nTPM
Schmiedel:
55.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
517.8
HPA sample
nTPM
Memory B-cell nTPM: 517.8
Samples: 6
Max nTPM: 690.1
Min nTPM: 376.7
P10809_1017
376.7
P10809_1025
489.1
P10809_1044
690.1
P10809_1063
514.9
P10809_1092
505.3
P10809_1105
530.7
Naive B-cell nTPM: 445.7
Samples: 6
Max nTPM: 680.3
Min nTPM: 290.3
P10809_1011
290.3
P10809_1029
372.8
P10809_1048
680.3
P10809_1067
423.0
P10809_1091
422.3
P10809_1104
485.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
336.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 276.5
Samples: 4
Max nTPM: 358.6
Min nTPM: 206.5
RHH5310_R3677
358.6
RHH5218_R3590
206.5
RHH5247_R3619
319.2
RHH5276_R3648
221.7
Naive B-cell nTPM: 276.4
Samples: 4
Max nTPM: 358.7
Min nTPM: 217.2
RHH5308_R3675
358.7
RHH5216_R3588
308.5
RHH5245_R3617
221.2
RHH5274_R3646
217.2
Non-switched memory B-cell nTPM: 302.2
Samples: 4
Max nTPM: 347.5
Min nTPM: 197.5
RHH5309_R3676
347.5
RHH5217_R3589
330.2
RHH5246_R3618
333.4
RHH5275_R3647
197.5
Plasmablast nTPM: 303.9
Samples: 4
Max nTPM: 330.0
Min nTPM: 266.0
RHH5312_R3679
308.2
RHH5220_R3592
330.0
RHH5249_R3621
311.4
RHH5278_R3650
266.0
Switched memory B-cell nTPM: 336.4
Samples: 4
Max nTPM: 480.7
Min nTPM: 207.0
RHH5311_R3678
480.7
RHH5219_R3591
399.4
RHH5248_R3620
258.6
RHH5277_R3649
207.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.8
Schmiedel sample id
TPM
Naive B-cell TPM: 55.8
Samples: 91
Max TPM: 91.7
Min TPM: 38.0
B_CELL_NAIVE_1
91.7
B_CELL_NAIVE_2
88.4
B_CELL_NAIVE_3
84.1
B_CELL_NAIVE_4
82.6
B_CELL_NAIVE_5
80.1
B_CELL_NAIVE_6
74.5
B_CELL_NAIVE_7
73.5
B_CELL_NAIVE_8
72.3
B_CELL_NAIVE_9
68.8
B_CELL_NAIVE_10
65.0
B_CELL_NAIVE_11
65.0
B_CELL_NAIVE_12
64.3
B_CELL_NAIVE_13
63.5
B_CELL_NAIVE_14
63.5
B_CELL_NAIVE_15
63.0
B_CELL_NAIVE_16
62.6
B_CELL_NAIVE_17
62.5
B_CELL_NAIVE_18
62.2
B_CELL_NAIVE_19
62.2
B_CELL_NAIVE_20
62.1
B_CELL_NAIVE_21
62.1
B_CELL_NAIVE_22
60.4
B_CELL_NAIVE_23
60.0
B_CELL_NAIVE_24
59.2
B_CELL_NAIVE_25
59.1
B_CELL_NAIVE_26
59.0
B_CELL_NAIVE_27
57.6
B_CELL_NAIVE_28
57.4
B_CELL_NAIVE_29
56.8
B_CELL_NAIVE_30
56.7
B_CELL_NAIVE_31
56.5
B_CELL_NAIVE_32
56.4
B_CELL_NAIVE_33
56.2
B_CELL_NAIVE_34
55.9
B_CELL_NAIVE_35
55.8
B_CELL_NAIVE_36
55.7
B_CELL_NAIVE_37
55.5
B_CELL_NAIVE_38
55.4
B_CELL_NAIVE_39
55.4
B_CELL_NAIVE_40
55.1
B_CELL_NAIVE_41
55.0
B_CELL_NAIVE_42
54.6
B_CELL_NAIVE_43
54.6
B_CELL_NAIVE_44
54.3
B_CELL_NAIVE_45
54.2
B_CELL_NAIVE_46
54.1
B_CELL_NAIVE_47
53.6
B_CELL_NAIVE_48
53.6
B_CELL_NAIVE_49
53.5
B_CELL_NAIVE_50
53.5
B_CELL_NAIVE_51
53.2
B_CELL_NAIVE_52
53.2
B_CELL_NAIVE_53
53.1
B_CELL_NAIVE_54
53.1
B_CELL_NAIVE_55
52.8
B_CELL_NAIVE_56
52.7
B_CELL_NAIVE_57
52.7
B_CELL_NAIVE_58
52.6
B_CELL_NAIVE_59
52.5
B_CELL_NAIVE_60
52.1
B_CELL_NAIVE_61
52.1
B_CELL_NAIVE_62
51.9
B_CELL_NAIVE_63
51.5
B_CELL_NAIVE_64
51.0
B_CELL_NAIVE_65
50.8
B_CELL_NAIVE_66
50.3
B_CELL_NAIVE_67
50.1
B_CELL_NAIVE_68
50.1
B_CELL_NAIVE_69
49.9
B_CELL_NAIVE_70
49.7
B_CELL_NAIVE_71
49.6
B_CELL_NAIVE_72
49.3
B_CELL_NAIVE_73
49.0
B_CELL_NAIVE_74
48.9
B_CELL_NAIVE_75
48.7
B_CELL_NAIVE_76
47.5
B_CELL_NAIVE_77
47.5
B_CELL_NAIVE_78
46.7
B_CELL_NAIVE_79
46.2
B_CELL_NAIVE_80
45.8
B_CELL_NAIVE_81
45.7
B_CELL_NAIVE_82
45.7
B_CELL_NAIVE_83
44.0
B_CELL_NAIVE_84
43.7
B_CELL_NAIVE_85
43.5
B_CELL_NAIVE_86
42.7
B_CELL_NAIVE_87
42.0
B_CELL_NAIVE_88
41.9
B_CELL_NAIVE_89
41.4
B_CELL_NAIVE_90
39.3
B_CELL_NAIVE_91
38.0
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The Human Protein Atlas project is funded
