A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
453.4
nTPM
Monaco:
238.3
nTPM
Schmiedel:
59.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
453.4
HPA sample
nTPM
NK-cell nTPM: 453.3
Samples: 6
Max nTPM: 586.0
Min nTPM: 222.6
P10809_1013
426.0
P10809_1033
475.4
P10809_1052
450.6
P10809_1071
559.5
P10809_1093
222.6
P10809_1103
586.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.3
Monaco sample
nTPM
NK-cell nTPM: 238.3
Samples: 4
Max nTPM: 310.4
Min nTPM: 149.8
RHH5316_R3683
249.4
RHH5224_R3596
310.4
RHH5253_R3625
149.8
RHH5282_R3654
243.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.3
Schmiedel sample id
TPM
NK-cell TPM: 59.3
Samples: 90
Max TPM: 118.9
Min TPM: 38.9
NK_1
118.9
NK_2
116.0
NK_3
95.6
NK_4
82.2
NK_5
77.4
NK_6
76.4
NK_7
74.3
NK_8
73.9
NK_9
72.8
NK_10
71.8
NK_11
69.5
NK_12
68.8
NK_13
68.5
NK_14
68.4
NK_15
67.6
NK_16
66.6
NK_17
66.3
NK_18
66.0
NK_19
65.9
NK_20
65.8
NK_21
65.2
NK_22
63.6
NK_23
63.1
NK_24
62.9
NK_25
62.9
NK_26
62.5
NK_27
62.4
NK_28
61.5
NK_29
61.3
NK_30
60.5
NK_31
60.1
NK_32
59.6
NK_33
59.6
NK_34
59.1
NK_35
58.9
NK_36
58.8
NK_37
58.6
NK_38
58.2
NK_39
58.2
NK_40
58.1
NK_41
58.0
NK_42
57.9
NK_43
57.7
NK_44
57.6
NK_45
57.4
NK_46
57.3
NK_47
57.0
NK_48
57.0
NK_49
56.4
NK_50
55.7
NK_51
55.7
NK_52
55.3
NK_53
55.2
NK_54
55.2
NK_55
55.1
NK_56
55.0
NK_57
54.6
NK_58
54.2
NK_59
54.2
NK_60
53.8
NK_61
53.6
NK_62
53.6
NK_63
53.2
NK_64
52.9
NK_65
52.7
NK_66
52.2
NK_67
52.0
NK_68
51.8
NK_69
51.8
NK_70
51.2
NK_71
51.0
NK_72
50.5
NK_73
50.2
NK_74
50.0
NK_75
49.6
NK_76
49.6
NK_77
49.5
NK_78
49.4
NK_79
49.1
NK_80
48.9
NK_81
48.5
NK_82
47.0
NK_83
46.7
NK_84
46.4
NK_85
45.4
NK_86
44.5
NK_87
44.4
NK_88
43.5
NK_89
40.8
NK_90
38.9
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