A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
551.4
nTPM
Monaco:
362.6
nTPM
Schmiedel:
95.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
551.4
HPA sample
nTPM
Classical monocyte nTPM: 437.7
Samples: 6
Max nTPM: 491.1
Min nTPM: 385.6
P10809_1003
491.1
P10809_1020
415.2
P10809_1039
487.5
P10809_1058
389.1
P10809_1080
385.6
P10809_1107
457.9
Intermediate monocyte nTPM: 499.9
Samples: 6
Max nTPM: 652.9
Min nTPM: 344.3
P10809_1004
344.3
P10809_1023
569.3
P10809_1042
488.6
P10809_1061
490.0
P10809_1081
454.5
P10809_1108
652.9
Non-classical monocyte nTPM: 551.4
Samples: 5
Max nTPM: 632.5
Min nTPM: 470.1
P10809_1005
470.1
P10809_1053
512.4
P10809_1072
597.3
P10809_1082
544.7
P10809_1109
632.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
362.6
Monaco sample
nTPM
Classical monocyte nTPM: 337.1
Samples: 4
Max nTPM: 428.2
Min nTPM: 219.1
RHH5313_R3680
327.6
RHH5221_R3593
219.1
RHH5250_R3622
428.2
RHH5279_R3651
373.6
Intermediate monocyte nTPM: 362.6
Samples: 4
Max nTPM: 475.1
Min nTPM: 261.6
RHH5314_R3681
422.0
RHH5222_R3594
261.6
RHH5251_R3623
291.6
RHH5280_R3652
475.1
Non-classical monocyte nTPM: 273.9
Samples: 4
Max nTPM: 376.7
Min nTPM: 191.3
RHH5315_R3682
297.9
RHH5223_R3595
191.3
RHH5252_R3624
229.6
RHH5281_R3653
376.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.0
Schmiedel sample id
TPM
Classical monocyte TPM: 67.0
Samples: 91
Max TPM: 84.2
Min TPM: 52.2
MONOCYTES_1
84.2
MONOCYTES_2
82.3
MONOCYTES_3
81.7
MONOCYTES_4
81.5
MONOCYTES_5
81.3
MONOCYTES_6
81.0
MONOCYTES_7
80.6
MONOCYTES_8
80.3
MONOCYTES_9
79.9
MONOCYTES_10
79.8
MONOCYTES_11
79.2
MONOCYTES_12
78.2
MONOCYTES_13
77.6
MONOCYTES_14
77.0
MONOCYTES_15
74.9
MONOCYTES_16
74.5
MONOCYTES_17
74.1
MONOCYTES_18
73.7
MONOCYTES_19
73.5
MONOCYTES_20
73.2
MONOCYTES_21
72.9
MONOCYTES_22
72.5
MONOCYTES_23
72.1
MONOCYTES_24
71.7
MONOCYTES_25
71.5
MONOCYTES_26
69.9
MONOCYTES_27
69.9
MONOCYTES_28
69.7
MONOCYTES_29
69.7
MONOCYTES_30
69.4
MONOCYTES_31
69.3
MONOCYTES_32
69.3
MONOCYTES_33
69.0
MONOCYTES_34
68.9
MONOCYTES_35
68.6
MONOCYTES_36
68.0
MONOCYTES_37
67.9
MONOCYTES_38
67.6
MONOCYTES_39
67.6
MONOCYTES_40
67.3
MONOCYTES_41
67.3
MONOCYTES_42
66.8
MONOCYTES_43
66.7
MONOCYTES_44
66.2
MONOCYTES_45
66.0
MONOCYTES_46
66.0
MONOCYTES_47
66.0
MONOCYTES_48
65.9
MONOCYTES_49
65.6
MONOCYTES_50
65.4
MONOCYTES_51
65.4
MONOCYTES_52
65.3
MONOCYTES_53
64.8
MONOCYTES_54
64.8
MONOCYTES_55
64.1
MONOCYTES_56
64.1
MONOCYTES_57
63.9
MONOCYTES_58
63.7
MONOCYTES_59
63.5
MONOCYTES_60
63.3
MONOCYTES_61
62.8
MONOCYTES_62
62.7
MONOCYTES_63
62.7
MONOCYTES_64
62.7
MONOCYTES_65
62.4
MONOCYTES_66
62.2
MONOCYTES_67
62.2
MONOCYTES_68
61.7
MONOCYTES_69
61.3
MONOCYTES_70
60.7
MONOCYTES_71
60.7
MONOCYTES_72
60.3
MONOCYTES_73
60.2
MONOCYTES_74
60.0
MONOCYTES_75
59.6
MONOCYTES_76
59.1
MONOCYTES_77
59.0
MONOCYTES_78
58.6
MONOCYTES_79
58.5
MONOCYTES_80
58.2
MONOCYTES_81
57.6
MONOCYTES_82
57.4
MONOCYTES_83
57.3
MONOCYTES_84
56.9
MONOCYTES_85
56.7
MONOCYTES_86
55.7
MONOCYTES_87
55.5
MONOCYTES_88
55.3
MONOCYTES_89
54.7
MONOCYTES_90
54.4
MONOCYTES_91
52.2
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Non-classical monocyte TPM: 95.0
Samples: 90
Max TPM: 134.8
Min TPM: 47.1
M2_1
134.8
M2_2
134.7
M2_3
131.3
M2_4
125.1
M2_5
123.3
M2_6
121.1
M2_7
119.7
M2_8
118.5
M2_9
115.8
M2_10
114.2
M2_11
113.4
M2_12
112.5
M2_13
111.6
M2_14
108.8
M2_15
108.1
M2_16
108.0
M2_17
106.7
M2_18
106.6
M2_19
105.1
M2_20
104.3
M2_21
103.4
M2_22
102.0
M2_23
101.8
M2_24
101.0
M2_25
100.6
M2_26
100.2
M2_27
99.6
M2_28
99.6
M2_29
99.4
M2_30
99.2
M2_31
98.9
M2_32
98.3
M2_33
96.7
M2_34
96.6
M2_35
95.9
M2_36
95.9
M2_37
95.8
M2_38
95.7
M2_39
95.7
M2_40
95.5
M2_41
95.4
M2_42
94.2
M2_43
93.7
M2_44
93.3
M2_45
93.1
M2_46
92.8
M2_47
92.3
M2_48
91.8
M2_49
91.6
M2_50
91.5
M2_51
91.3
M2_52
90.4
M2_53
90.0
M2_54
89.7
M2_55
89.5
M2_56
89.5
M2_57
89.2
M2_58
89.1
M2_59
88.5
M2_60
88.5
M2_61
88.0
M2_62
87.9
M2_63
87.3
M2_64
86.8
M2_65
86.8
M2_66
86.5
M2_67
86.2
M2_68
86.1
M2_69
85.0
M2_70
84.8
M2_71
84.7
M2_72
84.5
M2_73
84.1
M2_74
83.1
M2_75
82.7
M2_76
82.3
M2_77
82.0
M2_78
81.7
M2_79
81.3
M2_80
80.8
M2_81
80.2
M2_82
79.2
M2_83
78.3
M2_84
78.3
M2_85
78.3
M2_86
77.1
M2_87
75.3
M2_88
74.1
M2_89
69.9
M2_90
47.1
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The Human Protein Atlas project is funded
