A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
98.9
nTPM
Monaco:
27.1
nTPM
Schmiedel:
149.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.9
HPA sample
nTPM
Memory B-cell nTPM: 98.9
Samples: 6
Max nTPM: 119.1
Min nTPM: 72.0
P10809_1017
111.8
P10809_1025
109.8
P10809_1044
79.4
P10809_1063
72.0
P10809_1092
119.1
P10809_1105
101.3
Naive B-cell nTPM: 90.1
Samples: 6
Max nTPM: 124.5
Min nTPM: 74.8
P10809_1011
86.9
P10809_1029
92.6
P10809_1048
124.5
P10809_1067
77.4
P10809_1091
74.8
P10809_1104
84.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.1
Samples: 4
Max nTPM: 43.3
Min nTPM: 11.8
RHH5310_R3677
43.3
RHH5218_R3590
11.8
RHH5247_R3619
28.7
RHH5276_R3648
24.7
Naive B-cell nTPM: 18.2
Samples: 4
Max nTPM: 28.7
Min nTPM: 11.7
RHH5308_R3675
28.7
RHH5216_R3588
13.4
RHH5245_R3617
18.9
RHH5274_R3646
11.7
Non-switched memory B-cell nTPM: 20.5
Samples: 4
Max nTPM: 23.5
Min nTPM: 18.7
RHH5309_R3676
23.5
RHH5217_R3589
20.9
RHH5246_R3618
18.7
RHH5275_R3647
19.1
Plasmablast nTPM: 16.7
Samples: 4
Max nTPM: 23.3
Min nTPM: 10.4
RHH5312_R3679
23.3
RHH5220_R3592
10.4
RHH5249_R3621
20.0
RHH5278_R3650
13.1
Switched memory B-cell nTPM: 22.8
Samples: 4
Max nTPM: 43.0
Min nTPM: 12.2
RHH5311_R3678
43.0
RHH5219_R3591
22.0
RHH5248_R3620
14.1
RHH5277_R3649
12.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
149.9
Schmiedel sample id
TPM
Naive B-cell TPM: 149.9
Samples: 91
Max TPM: 225.8
Min TPM: 98.6
B_CELL_NAIVE_1
225.8
B_CELL_NAIVE_2
190.5
B_CELL_NAIVE_3
189.9
B_CELL_NAIVE_4
185.1
B_CELL_NAIVE_5
183.2
B_CELL_NAIVE_6
179.8
B_CELL_NAIVE_7
177.6
B_CELL_NAIVE_8
174.9
B_CELL_NAIVE_9
174.8
B_CELL_NAIVE_10
173.4
B_CELL_NAIVE_11
172.3
B_CELL_NAIVE_12
172.1
B_CELL_NAIVE_13
170.6
B_CELL_NAIVE_14
169.9
B_CELL_NAIVE_15
168.3
B_CELL_NAIVE_16
167.7
B_CELL_NAIVE_17
166.4
B_CELL_NAIVE_18
165.6
B_CELL_NAIVE_19
165.5
B_CELL_NAIVE_20
165.3
B_CELL_NAIVE_21
164.9
B_CELL_NAIVE_22
164.0
B_CELL_NAIVE_23
163.8
B_CELL_NAIVE_24
162.7
B_CELL_NAIVE_25
162.1
B_CELL_NAIVE_26
162.0
B_CELL_NAIVE_27
161.2
B_CELL_NAIVE_28
159.5
B_CELL_NAIVE_29
159.4
B_CELL_NAIVE_30
157.9
B_CELL_NAIVE_31
157.8
B_CELL_NAIVE_32
156.5
B_CELL_NAIVE_33
156.3
B_CELL_NAIVE_34
156.0
B_CELL_NAIVE_35
155.7
B_CELL_NAIVE_36
155.2
B_CELL_NAIVE_37
155.0
B_CELL_NAIVE_38
154.2
B_CELL_NAIVE_39
154.1
B_CELL_NAIVE_40
153.9
B_CELL_NAIVE_41
153.7
B_CELL_NAIVE_42
153.6
B_CELL_NAIVE_43
152.6
B_CELL_NAIVE_44
151.7
B_CELL_NAIVE_45
150.9
B_CELL_NAIVE_46
150.9
B_CELL_NAIVE_47
150.1
B_CELL_NAIVE_48
150.1
B_CELL_NAIVE_49
147.6
B_CELL_NAIVE_50
147.1
B_CELL_NAIVE_51
146.8
B_CELL_NAIVE_52
146.7
B_CELL_NAIVE_53
146.5
B_CELL_NAIVE_54
146.3
B_CELL_NAIVE_55
145.3
B_CELL_NAIVE_56
145.0
B_CELL_NAIVE_57
144.6
B_CELL_NAIVE_58
144.4
B_CELL_NAIVE_59
144.4
B_CELL_NAIVE_60
144.4
B_CELL_NAIVE_61
143.4
B_CELL_NAIVE_62
142.4
B_CELL_NAIVE_63
141.3
B_CELL_NAIVE_64
140.3
B_CELL_NAIVE_65
139.3
B_CELL_NAIVE_66
136.9
B_CELL_NAIVE_67
136.8
B_CELL_NAIVE_68
136.2
B_CELL_NAIVE_69
136.2
B_CELL_NAIVE_70
134.9
B_CELL_NAIVE_71
134.4
B_CELL_NAIVE_72
133.6
B_CELL_NAIVE_73
132.5
B_CELL_NAIVE_74
131.7
B_CELL_NAIVE_75
131.1
B_CELL_NAIVE_76
131.0
B_CELL_NAIVE_77
130.5
B_CELL_NAIVE_78
130.5
B_CELL_NAIVE_79
130.4
B_CELL_NAIVE_80
129.6
B_CELL_NAIVE_81
127.3
B_CELL_NAIVE_82
126.7
B_CELL_NAIVE_83
126.1
B_CELL_NAIVE_84
125.4
B_CELL_NAIVE_85
119.7
B_CELL_NAIVE_86
114.5
B_CELL_NAIVE_87
111.0
B_CELL_NAIVE_88
109.6
B_CELL_NAIVE_89
107.5
B_CELL_NAIVE_90
99.7
B_CELL_NAIVE_91
98.6
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The Human Protein Atlas project is funded
