A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57.0
nTPM
Monaco:
15.2
nTPM
Schmiedel:
123.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.0
HPA sample
nTPM
NK-cell nTPM: 57.0
Samples: 6
Max nTPM: 71.5
Min nTPM: 12.2
P10809_1013
58.1
P10809_1033
62.0
P10809_1052
71.0
P10809_1071
67.0
P10809_1093
12.2
P10809_1103
71.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.2
Monaco sample
nTPM
NK-cell nTPM: 15.2
Samples: 4
Max nTPM: 28.4
Min nTPM: 4.9
RHH5316_R3683
15.2
RHH5224_R3596
12.4
RHH5253_R3625
4.9
RHH5282_R3654
28.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.9
Schmiedel sample id
TPM
NK-cell TPM: 124.0
Samples: 90
Max TPM: 173.8
Min TPM: 84.7
NK_1
173.8
NK_2
172.0
NK_3
158.6
NK_4
157.1
NK_5
156.2
NK_6
154.9
NK_7
153.6
NK_8
152.8
NK_9
150.0
NK_10
147.5
NK_11
146.6
NK_12
145.7
NK_13
145.2
NK_14
143.5
NK_15
141.8
NK_16
140.4
NK_17
138.4
NK_18
138.2
NK_19
137.5
NK_20
137.4
NK_21
136.0
NK_22
135.5
NK_23
135.4
NK_24
134.7
NK_25
134.6
NK_26
134.0
NK_27
133.4
NK_28
132.3
NK_29
132.1
NK_30
131.5
NK_31
131.5
NK_32
130.9
NK_33
129.6
NK_34
129.0
NK_35
128.9
NK_36
128.5
NK_37
128.2
NK_38
127.3
NK_39
127.2
NK_40
125.8
NK_41
125.2
NK_42
124.3
NK_43
124.1
NK_44
122.0
NK_45
121.8
NK_46
121.4
NK_47
120.7
NK_48
120.7
NK_49
120.2
NK_50
119.7
NK_51
119.5
NK_52
119.0
NK_53
118.8
NK_54
117.1
NK_55
116.7
NK_56
116.4
NK_57
115.9
NK_58
114.9
NK_59
114.2
NK_60
113.9
NK_61
113.9
NK_62
113.8
NK_63
113.6
NK_64
113.5
NK_65
113.5
NK_66
113.0
NK_67
113.0
NK_68
112.8
NK_69
110.8
NK_70
110.1
NK_71
110.0
NK_72
109.7
NK_73
109.2
NK_74
109.1
NK_75
106.8
NK_76
106.6
NK_77
106.4
NK_78
105.7
NK_79
104.7
NK_80
104.5
NK_81
102.7
NK_82
102.6
NK_83
100.1
NK_84
97.6
NK_85
95.2
NK_86
94.0
NK_87
93.0
NK_88
91.5
NK_89
89.3
NK_90
84.7
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