A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
49.1
nTPM
Monaco:
13.0
nTPM
Schmiedel:
104.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.1
HPA sample
nTPM
Classical monocyte nTPM: 49.1
Samples: 6
Max nTPM: 117.3
Min nTPM: 26.4
P10809_1003
117.3
P10809_1020
43.9
P10809_1039
28.4
P10809_1058
35.3
P10809_1080
26.4
P10809_1107
43.2
Intermediate monocyte nTPM: 46.1
Samples: 6
Max nTPM: 72.7
Min nTPM: 27.4
P10809_1004
37.1
P10809_1023
48.7
P10809_1042
72.7
P10809_1061
36.1
P10809_1081
27.4
P10809_1108
54.3
Non-classical monocyte nTPM: 38.1
Samples: 5
Max nTPM: 56.0
Min nTPM: 15.6
P10809_1005
55.3
P10809_1053
31.4
P10809_1072
32.4
P10809_1082
15.6
P10809_1109
56.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.0
Monaco sample
nTPM
Classical monocyte nTPM: 13.0
Samples: 4
Max nTPM: 16.5
Min nTPM: 9.5
RHH5313_R3680
11.6
RHH5221_R3593
14.4
RHH5250_R3622
9.5
RHH5279_R3651
16.5
Intermediate monocyte nTPM: 9.6
Samples: 4
Max nTPM: 14.8
Min nTPM: 4.5
RHH5314_R3681
14.8
RHH5222_R3594
4.5
RHH5251_R3623
10.0
RHH5280_R3652
9.2
Non-classical monocyte nTPM: 11.1
Samples: 4
Max nTPM: 12.7
Min nTPM: 8.5
RHH5315_R3682
12.0
RHH5223_R3595
8.5
RHH5252_R3624
12.7
RHH5281_R3653
11.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.2
Schmiedel sample id
TPM
Classical monocyte TPM: 104.2
Samples: 91
Max TPM: 147.1
Min TPM: 82.3
MONOCYTES_1
147.1
MONOCYTES_2
130.9
MONOCYTES_3
126.9
MONOCYTES_4
124.8
MONOCYTES_5
123.2
MONOCYTES_6
122.2
MONOCYTES_7
121.5
MONOCYTES_8
118.0
MONOCYTES_9
118.0
MONOCYTES_10
117.7
MONOCYTES_11
116.8
MONOCYTES_12
114.3
MONOCYTES_13
114.0
MONOCYTES_14
112.8
MONOCYTES_15
112.4
MONOCYTES_16
112.4
MONOCYTES_17
111.8
MONOCYTES_18
111.5
MONOCYTES_19
111.0
MONOCYTES_20
110.8
MONOCYTES_21
110.8
MONOCYTES_22
110.7
MONOCYTES_23
110.3
MONOCYTES_24
109.9
MONOCYTES_25
109.3
MONOCYTES_26
109.0
MONOCYTES_27
108.7
MONOCYTES_28
108.4
MONOCYTES_29
108.3
MONOCYTES_30
108.3
MONOCYTES_31
108.1
MONOCYTES_32
107.9
MONOCYTES_33
107.6
MONOCYTES_34
107.4
MONOCYTES_35
107.2
MONOCYTES_36
106.9
MONOCYTES_37
106.8
MONOCYTES_38
105.8
MONOCYTES_39
105.7
MONOCYTES_40
105.6
MONOCYTES_41
105.5
MONOCYTES_42
105.3
MONOCYTES_43
105.0
MONOCYTES_44
104.8
MONOCYTES_45
103.7
MONOCYTES_46
102.7
MONOCYTES_47
102.2
MONOCYTES_48
102.1
MONOCYTES_49
101.6
MONOCYTES_50
101.3
MONOCYTES_51
100.8
MONOCYTES_52
100.7
MONOCYTES_53
100.3
MONOCYTES_54
99.9
MONOCYTES_55
99.6
MONOCYTES_56
99.4
MONOCYTES_57
99.2
MONOCYTES_58
99.1
MONOCYTES_59
99.0
MONOCYTES_60
99.0
MONOCYTES_61
98.9
MONOCYTES_62
98.6
MONOCYTES_63
98.6
MONOCYTES_64
98.5
MONOCYTES_65
98.0
MONOCYTES_66
97.3
MONOCYTES_67
97.1
MONOCYTES_68
97.0
MONOCYTES_69
97.0
MONOCYTES_70
97.0
MONOCYTES_71
96.8
MONOCYTES_72
96.6
MONOCYTES_73
96.4
MONOCYTES_74
96.0
MONOCYTES_75
95.1
MONOCYTES_76
94.9
MONOCYTES_77
94.8
MONOCYTES_78
94.2
MONOCYTES_79
92.9
MONOCYTES_80
92.9
MONOCYTES_81
92.8
MONOCYTES_82
92.7
MONOCYTES_83
92.5
MONOCYTES_84
92.4
MONOCYTES_85
92.4
MONOCYTES_86
92.3
MONOCYTES_87
89.5
MONOCYTES_88
88.3
MONOCYTES_89
86.2
MONOCYTES_90
83.6
MONOCYTES_91
82.3
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Non-classical monocyte TPM: 102.5
Samples: 90
Max TPM: 144.1
Min TPM: 72.6
M2_1
144.1
M2_2
133.0
M2_3
127.2
M2_4
120.8
M2_5
119.3
M2_6
118.4
M2_7
117.6
M2_8
116.2
M2_9
115.9
M2_10
115.1
M2_11
114.4
M2_12
114.4
M2_13
114.3
M2_14
113.4
M2_15
113.0
M2_16
113.0
M2_17
112.8
M2_18
112.3
M2_19
112.0
M2_20
111.7
M2_21
111.1
M2_22
110.8
M2_23
110.2
M2_24
109.3
M2_25
109.1
M2_26
108.9
M2_27
108.8
M2_28
108.5
M2_29
108.2
M2_30
107.7
M2_31
107.7
M2_32
106.5
M2_33
106.1
M2_34
106.1
M2_35
106.0
M2_36
105.9
M2_37
105.5
M2_38
105.4
M2_39
105.3
M2_40
104.6
M2_41
104.5
M2_42
104.4
M2_43
104.0
M2_44
103.6
M2_45
101.7
M2_46
101.7
M2_47
100.6
M2_48
100.1
M2_49
100.1
M2_50
99.9
M2_51
99.9
M2_52
99.5
M2_53
99.5
M2_54
99.2
M2_55
99.1
M2_56
98.5
M2_57
97.8
M2_58
97.7
M2_59
97.4
M2_60
97.2
M2_61
95.9
M2_62
95.8
M2_63
95.7
M2_64
95.6
M2_65
95.4
M2_66
94.6
M2_67
93.9
M2_68
93.8
M2_69
93.7
M2_70
93.3
M2_71
93.1
M2_72
92.6
M2_73
92.0
M2_74
91.8
M2_75
91.5
M2_76
91.1
M2_77
90.3
M2_78
90.0
M2_79
89.1
M2_80
89.1
M2_81
88.9
M2_82
88.4
M2_83
87.4
M2_84
86.9
M2_85
86.6
M2_86
85.2
M2_87
85.2
M2_88
82.2
M2_89
81.9
M2_90
72.6
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