A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.1
nTPM
Monaco:
32.2
nTPM
Schmiedel:
30.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.1
HPA sample
nTPM
Memory B-cell nTPM: 26.4
Samples: 6
Max nTPM: 53.0
Min nTPM: 13.7
P10809_1017
13.7
P10809_1025
22.4
P10809_1044
53.0
P10809_1063
20.5
P10809_1092
20.9
P10809_1105
27.9
Naive B-cell nTPM: 33.1
Samples: 6
Max nTPM: 58.4
Min nTPM: 19.1
P10809_1011
19.1
P10809_1029
32.3
P10809_1048
58.4
P10809_1067
25.1
P10809_1091
24.6
P10809_1104
38.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.9
Samples: 4
Max nTPM: 29.1
Min nTPM: 26.6
RHH5310_R3677
29.1
RHH5218_R3590
27.2
RHH5247_R3619
28.5
RHH5276_R3648
26.6
Naive B-cell nTPM: 32.2
Samples: 4
Max nTPM: 37.4
Min nTPM: 25.9
RHH5308_R3675
37.4
RHH5216_R3588
35.0
RHH5245_R3617
25.9
RHH5274_R3646
30.5
Non-switched memory B-cell nTPM: 28.5
Samples: 4
Max nTPM: 32.4
Min nTPM: 21.8
RHH5309_R3676
32.4
RHH5217_R3589
31.4
RHH5246_R3618
28.4
RHH5275_R3647
21.8
Plasmablast nTPM: 15.1
Samples: 4
Max nTPM: 17.7
Min nTPM: 12.1
RHH5312_R3679
17.7
RHH5220_R3592
15.1
RHH5249_R3621
15.6
RHH5278_R3650
12.1
Switched memory B-cell nTPM: 26.5
Samples: 4
Max nTPM: 28.9
Min nTPM: 24.4
RHH5311_R3678
28.9
RHH5219_R3591
26.3
RHH5248_R3620
24.4
RHH5277_R3649
26.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
Schmiedel sample id
TPM
Naive B-cell TPM: 30.6
Samples: 91
Max TPM: 65.6
Min TPM: 7.7
B_CELL_NAIVE_1
65.6
B_CELL_NAIVE_2
53.3
B_CELL_NAIVE_3
52.1
B_CELL_NAIVE_4
51.4
B_CELL_NAIVE_5
49.5
B_CELL_NAIVE_6
46.8
B_CELL_NAIVE_7
46.4
B_CELL_NAIVE_8
45.8
B_CELL_NAIVE_9
45.4
B_CELL_NAIVE_10
43.7
B_CELL_NAIVE_11
43.2
B_CELL_NAIVE_12
42.6
B_CELL_NAIVE_13
42.2
B_CELL_NAIVE_14
40.3
B_CELL_NAIVE_15
39.9
B_CELL_NAIVE_16
39.1
B_CELL_NAIVE_17
37.9
B_CELL_NAIVE_18
37.4
B_CELL_NAIVE_19
36.5
B_CELL_NAIVE_20
36.2
B_CELL_NAIVE_21
35.9
B_CELL_NAIVE_22
35.8
B_CELL_NAIVE_23
35.7
B_CELL_NAIVE_24
34.9
B_CELL_NAIVE_25
34.8
B_CELL_NAIVE_26
34.6
B_CELL_NAIVE_27
34.3
B_CELL_NAIVE_28
34.2
B_CELL_NAIVE_29
34.0
B_CELL_NAIVE_30
33.2
B_CELL_NAIVE_31
33.1
B_CELL_NAIVE_32
33.0
B_CELL_NAIVE_33
32.8
B_CELL_NAIVE_34
32.7
B_CELL_NAIVE_35
32.7
B_CELL_NAIVE_36
32.1
B_CELL_NAIVE_37
31.8
B_CELL_NAIVE_38
31.7
B_CELL_NAIVE_39
31.6
B_CELL_NAIVE_40
31.4
B_CELL_NAIVE_41
31.4
B_CELL_NAIVE_42
31.2
B_CELL_NAIVE_43
31.2
B_CELL_NAIVE_44
30.7
B_CELL_NAIVE_45
30.6
B_CELL_NAIVE_46
30.4
B_CELL_NAIVE_47
30.3
B_CELL_NAIVE_48
30.3
B_CELL_NAIVE_49
30.3
B_CELL_NAIVE_50
30.1
B_CELL_NAIVE_51
29.9
B_CELL_NAIVE_52
29.8
B_CELL_NAIVE_53
29.7
B_CELL_NAIVE_54
29.6
B_CELL_NAIVE_55
29.5
B_CELL_NAIVE_56
29.5
B_CELL_NAIVE_57
29.2
B_CELL_NAIVE_58
29.1
B_CELL_NAIVE_59
29.1
B_CELL_NAIVE_60
28.9
B_CELL_NAIVE_61
28.0
B_CELL_NAIVE_62
27.9
B_CELL_NAIVE_63
26.7
B_CELL_NAIVE_64
26.3
B_CELL_NAIVE_65
26.2
B_CELL_NAIVE_66
26.1
B_CELL_NAIVE_67
26.0
B_CELL_NAIVE_68
25.9
B_CELL_NAIVE_69
25.6
B_CELL_NAIVE_70
25.6
B_CELL_NAIVE_71
24.2
B_CELL_NAIVE_72
23.5
B_CELL_NAIVE_73
23.4
B_CELL_NAIVE_74
23.2
B_CELL_NAIVE_75
21.8
B_CELL_NAIVE_76
18.9
B_CELL_NAIVE_77
18.6
B_CELL_NAIVE_78
18.2
B_CELL_NAIVE_79
17.1
B_CELL_NAIVE_80
16.9
B_CELL_NAIVE_81
16.8
B_CELL_NAIVE_82
15.7
B_CELL_NAIVE_83
15.7
B_CELL_NAIVE_84
14.8
B_CELL_NAIVE_85
14.1
B_CELL_NAIVE_86
13.5
B_CELL_NAIVE_87
12.8
B_CELL_NAIVE_88
12.0
B_CELL_NAIVE_89
11.4
B_CELL_NAIVE_90
9.7
B_CELL_NAIVE_91
7.7
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