A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.6
nTPM
Monaco:
24.3
nTPM
Schmiedel:
19.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.6
HPA sample
nTPM
Classical monocyte nTPM: 28.3
Samples: 6
Max nTPM: 39.0
Min nTPM: 17.8
P10809_1003
17.8
P10809_1020
34.1
P10809_1039
38.6
P10809_1058
19.9
P10809_1080
20.1
P10809_1107
39.0
Intermediate monocyte nTPM: 33.5
Samples: 6
Max nTPM: 45.6
Min nTPM: 18.4
P10809_1004
25.3
P10809_1023
43.2
P10809_1042
42.3
P10809_1061
26.1
P10809_1081
18.4
P10809_1108
45.6
Non-classical monocyte nTPM: 37.6
Samples: 5
Max nTPM: 62.8
Min nTPM: 20.4
P10809_1005
24.5
P10809_1053
39.6
P10809_1072
62.8
P10809_1082
20.4
P10809_1109
40.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.3
Monaco sample
nTPM
Classical monocyte nTPM: 24.1
Samples: 4
Max nTPM: 28.1
Min nTPM: 18.9
RHH5313_R3680
25.1
RHH5221_R3593
18.9
RHH5250_R3622
24.3
RHH5279_R3651
28.1
Intermediate monocyte nTPM: 24.3
Samples: 4
Max nTPM: 28.6
Min nTPM: 18.2
RHH5314_R3681
24.0
RHH5222_R3594
28.6
RHH5251_R3623
18.2
RHH5280_R3652
26.3
Non-classical monocyte nTPM: 21.3
Samples: 4
Max nTPM: 24.5
Min nTPM: 18.5
RHH5315_R3682
24.5
RHH5223_R3595
21.3
RHH5252_R3624
18.5
RHH5281_R3653
20.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.6
Schmiedel sample id
TPM
Classical monocyte TPM: 19.6
Samples: 91
Max TPM: 40.1
Min TPM: 6.6
MONOCYTES_1
40.1
MONOCYTES_2
39.6
MONOCYTES_3
33.7
MONOCYTES_4
32.7
MONOCYTES_5
30.1
MONOCYTES_6
29.2
MONOCYTES_7
28.6
MONOCYTES_8
28.1
MONOCYTES_9
26.3
MONOCYTES_10
25.8
MONOCYTES_11
25.2
MONOCYTES_12
25.2
MONOCYTES_13
25.0
MONOCYTES_14
25.0
MONOCYTES_15
24.4
MONOCYTES_16
24.4
MONOCYTES_17
24.0
MONOCYTES_18
24.0
MONOCYTES_19
23.4
MONOCYTES_20
23.1
MONOCYTES_21
23.0
MONOCYTES_22
22.9
MONOCYTES_23
22.6
MONOCYTES_24
22.6
MONOCYTES_25
22.4
MONOCYTES_26
22.2
MONOCYTES_27
22.1
MONOCYTES_28
22.1
MONOCYTES_29
22.1
MONOCYTES_30
21.7
MONOCYTES_31
21.5
MONOCYTES_32
21.3
MONOCYTES_33
21.3
MONOCYTES_34
21.3
MONOCYTES_35
21.2
MONOCYTES_36
20.6
MONOCYTES_37
20.5
MONOCYTES_38
20.3
MONOCYTES_39
20.0
MONOCYTES_40
20.0
MONOCYTES_41
19.8
MONOCYTES_42
19.7
MONOCYTES_43
19.7
MONOCYTES_44
19.6
MONOCYTES_45
18.9
MONOCYTES_46
18.9
MONOCYTES_47
18.8
MONOCYTES_48
18.8
MONOCYTES_49
18.7
MONOCYTES_50
18.6
MONOCYTES_51
18.5
MONOCYTES_52
18.4
MONOCYTES_53
17.7
MONOCYTES_54
17.6
MONOCYTES_55
17.5
MONOCYTES_56
17.5
MONOCYTES_57
17.4
MONOCYTES_58
17.4
MONOCYTES_59
17.3
MONOCYTES_60
17.1
MONOCYTES_61
16.8
MONOCYTES_62
16.7
MONOCYTES_63
16.4
MONOCYTES_64
16.3
MONOCYTES_65
16.3
MONOCYTES_66
16.1
MONOCYTES_67
16.0
MONOCYTES_68
16.0
MONOCYTES_69
16.0
MONOCYTES_70
16.0
MONOCYTES_71
15.7
MONOCYTES_72
15.5
MONOCYTES_73
14.7
MONOCYTES_74
14.6
MONOCYTES_75
14.4
MONOCYTES_76
14.3
MONOCYTES_77
14.3
MONOCYTES_78
14.2
MONOCYTES_79
13.1
MONOCYTES_80
12.7
MONOCYTES_81
12.7
MONOCYTES_82
12.1
MONOCYTES_83
12.1
MONOCYTES_84
11.4
MONOCYTES_85
11.1
MONOCYTES_86
11.1
MONOCYTES_87
10.9
MONOCYTES_88
10.8
MONOCYTES_89
10.1
MONOCYTES_90
9.7
MONOCYTES_91
6.6
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Non-classical monocyte TPM: 17.7
Samples: 90
Max TPM: 37.7
Min TPM: 4.4
M2_1
37.7
M2_2
36.0
M2_3
33.8
M2_4
32.4
M2_5
30.5
M2_6
30.0
M2_7
29.0
M2_8
27.6
M2_9
26.6
M2_10
25.9
M2_11
24.6
M2_12
23.9
M2_13
23.9
M2_14
23.6
M2_15
23.6
M2_16
22.9
M2_17
22.7
M2_18
22.5
M2_19
22.1
M2_20
21.9
M2_21
21.6
M2_22
21.6
M2_23
21.5
M2_24
21.4
M2_25
20.8
M2_26
20.6
M2_27
20.5
M2_28
20.5
M2_29
20.3
M2_30
20.2
M2_31
20.0
M2_32
20.0
M2_33
19.5
M2_34
19.1
M2_35
18.9
M2_36
18.9
M2_37
18.9
M2_38
18.7
M2_39
18.4
M2_40
17.7
M2_41
17.7
M2_42
17.6
M2_43
17.6
M2_44
17.6
M2_45
16.9
M2_46
16.9
M2_47
16.9
M2_48
16.6
M2_49
16.6
M2_50
16.5
M2_51
16.2
M2_52
16.0
M2_53
16.0
M2_54
16.0
M2_55
15.7
M2_56
15.6
M2_57
15.6
M2_58
15.2
M2_59
15.1
M2_60
14.4
M2_61
14.2
M2_62
14.2
M2_63
14.2
M2_64
13.9
M2_65
13.7
M2_66
13.2
M2_67
13.0
M2_68
13.0
M2_69
12.9
M2_70
12.7
M2_71
12.5
M2_72
12.3
M2_73
12.2
M2_74
11.7
M2_75
11.3
M2_76
11.1
M2_77
11.0
M2_78
10.9
M2_79
10.6
M2_80
10.5
M2_81
9.6
M2_82
9.1
M2_83
8.9
M2_84
8.9
M2_85
8.4
M2_86
8.2
M2_87
7.4
M2_88
7.1
M2_89
6.7
M2_90
4.4
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