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  • AFAP1
TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:6.2 nTPM
HPA Brain:15.1 nTPM
GTEx:6.2 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:6.1 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015642Antibody CAB024712
Glial cells LowMedium
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.0
1857 Female, age 85, left hemisphere 15.3
1854 Male, age 80, left hemisphere 14.5
1781 Male, age 74, unknown 12.4
2290 Female, age 72, unknown 12.4
2846 Female, age 79, unknown 12.2
2289 Male, age 61, right hemisphere 11.1
2481 Female, age 94, left hemisphere 10.3
2288 Male, age 75, left hemisphere 7.7
Globus pallidus, externus
nTPM: 7.4
2646 Male, age 61, right hemisphere 8.0
2395 Male, age 75, both hemispheres 7.9
1996 Male, age 80, right hemisphere 7.2
2772 Female, age 79, unknown 7.2
2567 Female, age 72, unknown 6.8
Globus pallidus, internus
nTPM: 7.1
2483 Female, age 94, right hemisphere 8.9
2566 Female, age 72, unknown 8.1
2287 Male, age 75, right hemisphere 7.6
2037 Male, age 80, right hemisphere 7.2
2111 Female, age 85, right hemisphere 6.5
2778 Female, age 91, both hemispheres 6.1
1818 Male, age 74, unknown 5.5
Nucleus accumbens
nTPM: 14.6
1856 Female, age 91, right hemisphere 20.4
1806 Female, age 85, left hemisphere 17.3
2824 Male, age 61, right hemisphere 17.2
1783 Male, age 74, unknown 16.4
2698 Female, age 72, unknown 13.7
2732 Male, age 80, right hemisphere 13.3
2391 Female, age 94, left hemisphere 10.1
2286 Male, age 75, left hemisphere 8.7
Nucleus basalis of Meynert
nTPM: 11.6
2484 Female, age 94, left hemisphere 14.5
2393 Male, age 80, right hemisphere 12.9
2821 Male, age 75, both hemispheres 9.6
2569 Male, age 61, both hemispheres 9.4
Nucleus of the diagonal band
nTPM: 14.8
2195 Female, age 85, both hemispheres 17.7
2775 Male, age 80, right hemisphere 16.3
1812 Female, age 91, both hemispheres 15.3
1979 Male, age 74, unknown 13.7
2029 Male, age 61, right hemisphere 10.8
Putamen
nTPM: 11.9
1838 Male, age 80, right hemisphere 18.4
1937 Female, age 91, right hemisphere 15.0
2466 Female, age 79, unknown 12.6
1829 Male, age 74, unknown 10.6
2482 Female, age 94, left hemisphere 10.4
2489 Female, age 72, unknown 8.8
2647 Male, age 75, left hemisphere 7.3
Septal nuclei
nTPM: 15.1
2031 Female, age 72, unknown 20.4
1960 Male, age 74, unknown 19.2
2059 Female, age 85, both hemispheres 15.9
2009 Female, age 91, both hemispheres 14.2
2394 Male, age 61, left hemisphere 12.8
2629 Female, age 94, right hemisphere 12.4
2199 Male, age 80, right hemisphere 10.7
Stria terminalis, bed nucleus
nTPM: 12.7
2486 Female, age 94, both hemispheres 15.1
1974 Female, age 91, both hemispheres 12.5
2201 Male, age 74, unknown 10.4

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.7
Samples: 246

Max nTPM: 8.5
Min nTPM: 1.7
Std nTPM: 0.9
Median nTPM: 4.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 8.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 7.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 7.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 6.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 6.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 6.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 6.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 6.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 6.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 6.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 6.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 6.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 6.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 6.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 6.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 6.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 6.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 6.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 6.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 6.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 6.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 6.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 6.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 6.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 6.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 6.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 6.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 6.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 5.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 5.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 5.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 5.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 5.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 5.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 5.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 5.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 5.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 5.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 5.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 5.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 5.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 5.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 5.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 5.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 5.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 5.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 5.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 5.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 5.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 5.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 5.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 5.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 5.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 5.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 5.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 5.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 5.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 5.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 5.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 5.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 5.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 5.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 5.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 5.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 5.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 5.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 5.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 5.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 5.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 5.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 5.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 5.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 5.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 5.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 5.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 5.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 5.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 5.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 5.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 5.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 5.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 5.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 4.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 4.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 4.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 4.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 4.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 4.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 4.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 4.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 4.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 4.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 4.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 4.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 4.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 4.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 4.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 4.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 4.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 4.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 4.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 4.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 4.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 4.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 4.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 4.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 4.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 4.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 4.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 4.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 4.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 4.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 4.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 4.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 4.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 4.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 4.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 4.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 4.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 4.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 4.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 4.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 4.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 4.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 4.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 4.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 4.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 4.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 4.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 4.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 4.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 4.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 4.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 4.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 4.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 4.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 4.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 4.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 4.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 4.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 4.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 4.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 4.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 4.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 4.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 4.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 4.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 4.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 4.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 4.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 4.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 4.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 4.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 4.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 4.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 4.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 4.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 4.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 4.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 4.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 4.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 4.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 4.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 4.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 4.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 4.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 4.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 4.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 3.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 3.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 3.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 3.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 3.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 3.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 3.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 3.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 3.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 3.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 3.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 3.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 3.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 3.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 3.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 3.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 3.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 3.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 3.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 3.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 3.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 3.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 3.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 3.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 3.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 3.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 3.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 2.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.2
Samples: 246

Max nTPM: 13.6
Min nTPM: 1.9
Std nTPM: 1.7
Median nTPM: 6.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 13.6
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 12.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 11.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 11.6
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 10.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 10.2
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 10.2
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 9.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 9.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 9.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 9.4
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 9.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 9.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 9.0
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 9.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 8.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 8.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 8.6
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 8.5
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 8.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 8.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 8.1
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 8.1
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 8.1
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 8.1
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 8.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 8.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 8.0
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 8.0
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 8.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 7.9
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 7.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 7.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 7.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 7.8
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 7.8
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 7.7
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 7.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 7.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 7.7
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 7.7
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 7.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 7.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 7.6
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 7.5
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 7.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 7.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 7.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 7.4
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 7.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 7.4
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 7.3
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 7.3
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 7.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 7.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 7.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 7.3
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 7.3
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 7.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 7.1
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 7.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 7.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 7.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 7.1
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 7.1
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 7.1
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 7.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 7.0
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 7.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 7.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 7.0
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 7.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 7.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 7.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 6.9
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 6.9
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 6.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 6.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 6.9
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 6.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 6.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 6.9
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 6.8
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 6.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 6.8
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 6.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 6.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 6.8
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 6.8
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 6.7
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 6.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 6.7
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 6.7
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 6.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 6.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 6.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 6.6
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 6.6
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 6.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 6.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 6.5
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 6.5
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 6.4
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 6.4
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 6.4
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 6.4
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 6.4
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 6.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 6.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 6.4
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 6.4
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 6.4
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 6.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 6.3
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 6.3
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 6.3
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 6.3
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 6.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 6.2
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 6.2
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 6.2
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 6.2
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 6.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 6.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 6.1
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 6.1
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 6.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 6.0
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 6.0
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 6.0
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 6.0
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 6.0
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 6.0
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 6.0
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 5.9
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 5.9
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 5.9
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 5.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 5.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 5.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 5.8
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 5.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 5.8
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 5.8
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 5.7
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 5.7
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 5.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 5.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 5.7
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 5.7
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 5.7
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 5.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 5.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 5.6
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 5.6
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 5.6
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 5.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 5.5
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 5.5
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 5.5
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 5.5
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 5.5
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 5.5
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 5.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 5.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 5.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 5.4
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 5.4
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 5.4
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 5.4
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 5.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 5.4
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 5.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 5.3
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 5.3
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 5.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 5.2
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 5.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 5.2
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 5.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 5.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 5.2
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 5.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 5.1
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 5.1
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 5.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 5.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 5.0
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 5.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 5.0
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 5.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 5.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 4.9
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 4.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 4.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 4.9
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 4.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 4.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 4.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 4.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 4.6
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 4.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 4.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 4.5
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 4.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 4.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 4.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 4.4
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 4.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 4.4
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 4.3
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 4.3
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 4.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 4.3
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 4.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 4.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 4.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 4.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 4.1
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 4.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 4.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 4.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 4.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 3.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 3.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 3.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 3.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 3.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 3.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 3.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 3.5
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 3.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 3.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 3.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 3.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 3.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 3.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 3.3
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 3.3
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 3.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 2.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 2.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 2.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 2.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 2.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 1.9
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Brain - Putamen (basal ganglia)
Average nTPM: 4.7
Samples: 205

Max nTPM: 9.8
Min nTPM: 2.2
Std nTPM: 1.2
Median nTPM: 4.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 9.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 9.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 9.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 8.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 7.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 7.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 6.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 6.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 6.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 6.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 6.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 6.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 6.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 6.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 6.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 6.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 6.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 6.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 6.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 6.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 6.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 6.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 6.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 6.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 6.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 5.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 5.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 5.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 5.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 5.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 5.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 5.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 5.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 5.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 5.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 5.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 5.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 5.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 5.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 5.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 5.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 5.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 5.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 5.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 5.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 5.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 5.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 5.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 5.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 5.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 5.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 5.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 5.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 5.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 5.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 5.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 5.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 5.2
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 5.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 5.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 5.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 5.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 5.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 5.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 5.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 5.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 5.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 5.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 5.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 5.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 5.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 5.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 4.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 4.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 4.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 4.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 4.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 4.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 4.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 4.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 4.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 4.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 4.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 4.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 4.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 4.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 4.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 4.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 4.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 4.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 4.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 4.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 4.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 4.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 4.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 4.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 4.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 4.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 4.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 4.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 4.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 4.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 4.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 4.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 4.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 4.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 4.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 4.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 4.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 4.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 4.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 4.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 4.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 4.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 4.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 4.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 4.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 4.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 4.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 4.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 4.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 4.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 4.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 4.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 4.2
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 4.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 4.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 4.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 4.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 4.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 4.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 4.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 4.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 4.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 4.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 4.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 4.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 4.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 4.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 4.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 4.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 4.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 4.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 4.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 3.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 3.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 3.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 3.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 3.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 3.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 3.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 3.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 3.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 3.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 3.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 3.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 3.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 3.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 3.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 3.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 3.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 3.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 3.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 3.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 3.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 3.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 3.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 3.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 3.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 3.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 3.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 3.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 3.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 3.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 3.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 3.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 3.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 3.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 3.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 3.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 3.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 3.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 3.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 3.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 3.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 3.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 3.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 3.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 2.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 2.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 2.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 2.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 2.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 2.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 2.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 2.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 2.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 2.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2.2
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.8
FF:10164-103B2 76 years, female 25.8
Nucleus accumbens
Scaled Tags Per Million: 26.1
FF:10037-101F1 23-56 years, mixed 26.1
Putamen
Scaled Tags Per Million: 23.0
FF:10176-103C5 60 years, female 23.0
Globus pallidus
Scaled Tags Per Million: 13.1
FF:10175-103C4 60 years, female 14.9
FF:10161-103A8 76 years, female 11.4

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.6
Pig sample Sample description nTPM
Caudate
nTPM: 8.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 8.0
Sample C Male 10.1
Sample D Male 9.0
Putamen
nTPM: 8.3
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 7.7
Sample C Male 9.9
Sample D Male 8.9
Septum
nTPM: 7.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 4.8
Sample A Female 7.5
Sample B Female 9.0
Sample C Male 9.3
Sample D Male 4.8
Ventral pallidum
nTPM: 8.6
Samples: 4

Max nTPM: 11.0
Min nTPM: 7.3
Sample A Female 8.1
Sample B Female 8.1
Sample C Male 11.0
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.2
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.6
Sample A Male 6.1
Sample B Male 5.6
Sample C Female 7.2
Sample D Female 5.7
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.9
Sample A Male 4.9
Sample B Male 3.5
Sample C Female 2.9
Sample D Female 5.9
Ventral forebrain
nTPM: 5.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.8
Sample A Male 5.7
Sample B Male 5.9
Sample C Female 4.8
Sample D Female 7.3

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
69114938 Antisense, RP_050317_02_D02, Mouse strain C57BL/6J (56 days, male) 1.0
74425569 Antisense, RP_051214_02_H10, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.5
69114938 Antisense, RP_050317_02_D02, Mouse strain C57BL/6J (56 days, male) 0.8
74425569 Antisense, RP_051214_02_H10, Mouse strain C57BL/6J (56 days, male) 0.3

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