MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.7 nTPM
HPA Brain:358.8 nTPM
GTEx:57.7 nTPM
FANTOM5:265.7 Scaled Tags Per Million
Pig:241.5 nTPM
Mouse:163.5 nTPM
Allen mouse:16.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 358.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 283.6
2019 Male, age 18, unknown 360.4
2219 Male, age 76, both hemispheres 329.9
2828 Female, age 72, unknown 320.2
1827 Male, age 72, unknown 315.1
2666 Male, age 74, left hemisphere 283.4
2586 Male, age 75, left hemisphere 279.5
2411 Female, age 72, unknown 270.3
1833 Male, age 53, unknown 233.5
1830 Male, age 51, unknown 222.7
1870 Female, age 42, unknown 221.4
Dorsal raphe nucleus
nTPM: 310.1
2298 Female, age 72, unknown 363.0
2047 Male, age 72, unknown 342.1
1828 Male, age 53, unknown 335.9
2016 Female, age 72, unknown 281.8
2750 Male, age 76, both hemispheres 227.6
Inferior colliculus
nTPM: 298.5
2097 Female, age 72, unknown 325.9
1848 Female, age 42, unknown 308.3
2849 Male, age 72, unknown 283.1
1890 Male, age 53, unknown 276.7
Median raphe nucleus
nTPM: 265.4
2220 Male, age 76, midline 265.4
Periaquaductal grey, anterior
nTPM: 331.2
1795 Male, age 51, unknown 345.8
2502 Female, age 75, unknown 328.8
1947 Male, age 18, unknown 319.1
Periaquaductal grey, dorsal
nTPM: 276.1
1840 Male, age 53, unknown 303.4
1831 Male, age 72, unknown 279.1
2464 Female, age 72, unknown 269.1
2850 Male, age 76, both hemispheres 252.9
Periaquaductal grey, lateral
nTPM: 280.6
2272 Male, age 74, both hemispheres 307.9
2140 Male, age 76, both hemispheres 280.2
2053 Male, age 18, unknown 253.8
Pretectal area
nTPM: 338.1
1816 Male, age 51, unknown 412.7
1944 Female, age 72, unknown 402.0
2007 Male, age 72, unknown 387.8
2273 Male, age 74, both hemispheres 384.7
1817 Female, age 42, unknown 362.5
2667 Female, age 75, unknown 323.0
2224 Female, age 72, unknown 322.7
1815 Male, age 53, unknown 304.5
2407 Male, age 75, both hemispheres 297.5
2316 Male, age 76, right hemisphere 267.2
2825 Male, age 18, unknown 254.3
Red nucleus
nTPM: 251.4
2785 Male, age 18, unknown 328.4
2725 Female, age 75, unknown 292.4
2503 Female, age 72, unknown 264.5
1821 Female, age 72, unknown 260.3
2584 Male, age 75, left hemisphere 256.9
2769 Male, age 72, unknown 242.6
1865 Male, age 51, unknown 241.2
2227 Male, age 72, unknown 241.0
1954 Female, age 42, unknown 238.5
2588 Male, age 74, left hemisphere 235.8
1904 Male, age 53, unknown 214.3
2823 Male, age 76, right hemisphere 200.4
Substantia nigra
nTPM: 358.8
1941 Male, age 53, unknown 511.0
1916 Female, age 42, unknown 495.7
1851 Male, age 51, unknown 380.2
2665 Male, age 74, both hemispheres 345.9
1889 Female, age 72, unknown 335.0
2590 Female, age 75, unknown 330.6
2241 Male, age 72, unknown 324.9
2699 Male, age 18, unknown 299.4
2583 Male, age 75, right hemisphere 295.5
2409 Female, age 72, unknown 270.2
Superior colliculus
nTPM: 299.9
2087 Female, age 72, unknown 359.1
2664 Male, age 75, both hemispheres 356.6
1796 Male, age 53, unknown 318.7
2587 Male, age 74, left hemisphere 313.6
2261 Male, age 18, unknown 308.8
1895 Male, age 76, right hemisphere 308.2
2668 Female, age 75, unknown 280.5
1839 Male, age 51, unknown 273.5
1995 Male, age 72, unknown 242.8
1913 Female, age 42, unknown 237.0
Ventral tegmental area
nTPM: 314.7
1915 Female, age 42, unknown 367.8
2410 Female, age 72, unknown 334.1
2218 Male, age 76, both hemispheres 327.6
1942 Male, age 51, unknown 316.2
2021 Male, age 53, unknown 273.2
2223 Female, age 72, unknown 269.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.7
Samples: 183

Max nTPM: 269.3
Min nTPM: 20.7
Std nTPM: 28.1
Median nTPM: 51.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 269.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 190.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 139.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 124.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 123.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 116.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 115.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 111.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 109.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 106.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 105.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 265.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 265.7
FF:10158-103A5 76 years, female 265.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 241.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 198.6
Samples: 4

Max nTPM: 263.4
Min nTPM: 105.1
Sample A Female 261.0
Sample B Female 164.8
Sample C Male 263.4
Sample D Male 105.1
Midbrain
nTPM: 212.0
Samples: 4

Max nTPM: 351.5
Min nTPM: 117.4
Sample A Female 117.4
Sample B Female 144.1
Sample C Male 351.5
Sample D Male 234.9
Periaqueductal gray
nTPM: 146.2
Samples: 3

Max nTPM: 181.8
Min nTPM: 115.2
Sample B Female 141.5
Sample C Male 181.8
Sample D Male 115.2
Superior colliculi
nTPM: 241.5
Samples: 4

Max nTPM: 305.6
Min nTPM: 195.1
Sample A Female 234.0
Sample B Female 195.1
Sample C Male 305.6
Sample D Male 231.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 163.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.5
Samples: 4

Max nTPM: 184.5
Min nTPM: 134.0
Sample A Male 134.0
Sample B Male 170.1
Sample C Female 184.5
Sample D Female 165.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
70596059 Antisense, RP_050628_04_A03, Mouse strain C57BL/6J (56 days, male) 18.9
69885690 Antisense, RP_050512_03_C04, Mouse strain C57BL/6J (56 days, male) 13.9

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