A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
873.9
nTPM
Monaco:
50.4
nTPM
Schmiedel:
169.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
873.9
HPA sample
nTPM
Memory B-cell nTPM: 873.9
Samples: 6
Max nTPM: 1392.4
Min nTPM: 262.6
P10809_1017
875.9
P10809_1025
881.7
P10809_1044
1392.4
P10809_1063
262.6
P10809_1092
928.5
P10809_1105
902.3
Naive B-cell nTPM: 721.5
Samples: 6
Max nTPM: 986.4
Min nTPM: 250.7
P10809_1011
729.1
P10809_1029
793.9
P10809_1048
986.4
P10809_1067
250.7
P10809_1091
765.9
P10809_1104
803.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 29.8
Samples: 4
Max nTPM: 53.8
Min nTPM: 6.9
RHH5310_R3677
20.0
RHH5218_R3590
6.9
RHH5247_R3619
38.4
RHH5276_R3648
53.8
Naive B-cell nTPM: 16.7
Samples: 4
Max nTPM: 37.3
Min nTPM: 5.3
RHH5308_R3675
11.5
RHH5216_R3588
5.3
RHH5245_R3617
37.3
RHH5274_R3646
12.5
Non-switched memory B-cell nTPM: 12.2
Samples: 4
Max nTPM: 19.0
Min nTPM: 6.3
RHH5309_R3676
13.8
RHH5217_R3589
9.7
RHH5246_R3618
6.3
RHH5275_R3647
19.0
Plasmablast nTPM: 50.4
Samples: 4
Max nTPM: 58.6
Min nTPM: 31.3
RHH5312_R3679
58.6
RHH5220_R3592
31.3
RHH5249_R3621
58.0
RHH5278_R3650
53.5
Switched memory B-cell nTPM: 11.9
Samples: 4
Max nTPM: 20.6
Min nTPM: 6.8
RHH5311_R3678
8.4
RHH5219_R3591
11.9
RHH5248_R3620
6.8
RHH5277_R3649
20.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
169.0
Schmiedel sample id
TPM
Naive B-cell TPM: 169.0
Samples: 91
Max TPM: 525.6
Min TPM: 39.0
B_CELL_NAIVE_1
525.6
B_CELL_NAIVE_2
408.8
B_CELL_NAIVE_3
402.6
B_CELL_NAIVE_4
386.1
B_CELL_NAIVE_5
377.3
B_CELL_NAIVE_6
374.4
B_CELL_NAIVE_7
364.6
B_CELL_NAIVE_8
346.3
B_CELL_NAIVE_9
342.1
B_CELL_NAIVE_10
272.2
B_CELL_NAIVE_11
268.0
B_CELL_NAIVE_12
258.3
B_CELL_NAIVE_13
249.0
B_CELL_NAIVE_14
248.9
B_CELL_NAIVE_15
243.7
B_CELL_NAIVE_16
242.3
B_CELL_NAIVE_17
239.9
B_CELL_NAIVE_18
238.4
B_CELL_NAIVE_19
238.0
B_CELL_NAIVE_20
237.6
B_CELL_NAIVE_21
232.8
B_CELL_NAIVE_22
228.7
B_CELL_NAIVE_23
225.7
B_CELL_NAIVE_24
225.4
B_CELL_NAIVE_25
217.8
B_CELL_NAIVE_26
216.2
B_CELL_NAIVE_27
215.3
B_CELL_NAIVE_28
209.0
B_CELL_NAIVE_29
207.6
B_CELL_NAIVE_30
207.5
B_CELL_NAIVE_31
206.7
B_CELL_NAIVE_32
206.4
B_CELL_NAIVE_33
206.1
B_CELL_NAIVE_34
204.9
B_CELL_NAIVE_35
204.5
B_CELL_NAIVE_36
202.6
B_CELL_NAIVE_37
196.3
B_CELL_NAIVE_38
195.2
B_CELL_NAIVE_39
191.2
B_CELL_NAIVE_40
188.1
B_CELL_NAIVE_41
187.2
B_CELL_NAIVE_42
185.8
B_CELL_NAIVE_43
183.0
B_CELL_NAIVE_44
179.7
B_CELL_NAIVE_45
178.5
B_CELL_NAIVE_46
176.8
B_CELL_NAIVE_47
173.3
B_CELL_NAIVE_48
171.1
B_CELL_NAIVE_49
161.2
B_CELL_NAIVE_50
143.9
B_CELL_NAIVE_51
142.8
B_CELL_NAIVE_52
140.0
B_CELL_NAIVE_53
127.3
B_CELL_NAIVE_54
125.3
B_CELL_NAIVE_55
113.9
B_CELL_NAIVE_56
94.7
B_CELL_NAIVE_57
89.8
B_CELL_NAIVE_58
84.8
B_CELL_NAIVE_59
83.8
B_CELL_NAIVE_60
81.9
B_CELL_NAIVE_61
81.4
B_CELL_NAIVE_62
81.4
B_CELL_NAIVE_63
80.7
B_CELL_NAIVE_64
78.0
B_CELL_NAIVE_65
77.2
B_CELL_NAIVE_66
77.1
B_CELL_NAIVE_67
75.6
B_CELL_NAIVE_68
74.3
B_CELL_NAIVE_69
74.0
B_CELL_NAIVE_70
72.6
B_CELL_NAIVE_71
72.1
B_CELL_NAIVE_72
71.8
B_CELL_NAIVE_73
71.3
B_CELL_NAIVE_74
70.1
B_CELL_NAIVE_75
68.6
B_CELL_NAIVE_76
67.5
B_CELL_NAIVE_77
67.1
B_CELL_NAIVE_78
66.9
B_CELL_NAIVE_79
66.8
B_CELL_NAIVE_80
66.5
B_CELL_NAIVE_81
64.8
B_CELL_NAIVE_82
63.9
B_CELL_NAIVE_83
63.0
B_CELL_NAIVE_84
62.1
B_CELL_NAIVE_85
61.1
B_CELL_NAIVE_86
59.0
B_CELL_NAIVE_87
58.1
B_CELL_NAIVE_88
57.0
B_CELL_NAIVE_89
56.8
B_CELL_NAIVE_90
53.9
B_CELL_NAIVE_91
39.0
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