A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
607.6
nTPM
Monaco:
12.4
nTPM
Schmiedel:
185.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
607.6
HPA sample
nTPM
NK-cell nTPM: 607.6
Samples: 6
Max nTPM: 863.0
Min nTPM: 301.9
P10809_1013
863.0
P10809_1033
789.8
P10809_1052
681.4
P10809_1071
301.9
P10809_1093
393.2
P10809_1103
616.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Monaco sample
nTPM
NK-cell nTPM: 12.4
Samples: 4
Max nTPM: 14.3
Min nTPM: 8.9
RHH5316_R3683
14.3
RHH5224_R3596
13.2
RHH5253_R3625
13.3
RHH5282_R3654
8.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
185.0
Schmiedel sample id
TPM
NK-cell TPM: 185.0
Samples: 90
Max TPM: 481.1
Min TPM: 74.1
NK_1
481.1
NK_2
415.9
NK_3
392.7
NK_4
377.5
NK_5
367.6
NK_6
330.0
NK_7
319.5
NK_8
297.1
NK_9
292.4
NK_10
291.8
NK_11
277.2
NK_12
272.8
NK_13
269.1
NK_14
239.8
NK_15
239.2
NK_16
237.8
NK_17
235.2
NK_18
234.9
NK_19
234.0
NK_20
232.9
NK_21
232.7
NK_22
231.2
NK_23
227.7
NK_24
225.1
NK_25
224.9
NK_26
223.8
NK_27
219.5
NK_28
218.6
NK_29
218.6
NK_30
215.7
NK_31
212.8
NK_32
212.7
NK_33
211.9
NK_34
211.7
NK_35
207.6
NK_36
207.2
NK_37
204.9
NK_38
203.7
NK_39
200.5
NK_40
198.8
NK_41
196.9
NK_42
192.9
NK_43
173.3
NK_44
172.4
NK_45
170.9
NK_46
170.3
NK_47
168.1
NK_48
167.7
NK_49
167.5
NK_50
165.6
NK_51
158.9
NK_52
157.9
NK_53
150.2
NK_54
138.9
NK_55
137.3
NK_56
130.2
NK_57
129.1
NK_58
128.7
NK_59
126.7
NK_60
124.5
NK_61
122.0
NK_62
122.0
NK_63
119.4
NK_64
119.4
NK_65
117.5
NK_66
117.5
NK_67
116.4
NK_68
115.7
NK_69
114.9
NK_70
114.6
NK_71
110.7
NK_72
108.3
NK_73
108.3
NK_74
108.2
NK_75
107.5
NK_76
105.8
NK_77
105.7
NK_78
105.7
NK_79
104.9
NK_80
103.1
NK_81
103.0
NK_82
101.5
NK_83
100.5
NK_84
99.5
NK_85
98.0
NK_86
91.7
NK_87
91.3
NK_88
88.6
NK_89
81.9
NK_90
74.1
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