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BETA
  • SUMMARY

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  • BRAIN

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  • RPL37A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:4466.8 nTPM
Monaco:588.9 nTPM
Schmiedel:469.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

4466.8
HPA sample nTPM
Memory B-cell
nTPM: 4466.8
Samples: 6

Max nTPM: 5116.8
Min nTPM: 3741.8
P10809_1017 4180.4
P10809_1025 4687.0
P10809_1044 3741.8
P10809_1063 4686.8
P10809_1092 4388.0
P10809_1105 5116.8
Naive B-cell
nTPM: 4277.6
Samples: 6

Max nTPM: 5289.1
Min nTPM: 3051.4
P10809_1011 3886.8
P10809_1029 4325.4
P10809_1048 3051.4
P10809_1067 4835.1
P10809_1091 4277.6
P10809_1104 5289.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

588.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 556.5
Samples: 4

Max nTPM: 891.9
Min nTPM: 163.9
RHH5310_R3677 347.1
RHH5218_R3590 163.9
RHH5247_R3619 823.2
RHH5276_R3648 891.9
Naive B-cell
nTPM: 588.9
Samples: 4

Max nTPM: 1344.1
Min nTPM: 174.8
RHH5308_R3675 363.9
RHH5216_R3588 174.8
RHH5245_R3617 1344.1
RHH5274_R3646 472.9
Non-switched memory B-cell
nTPM: 383.6
Samples: 4

Max nTPM: 867.5
Min nTPM: 118.7
RHH5309_R3676 349.1
RHH5217_R3589 199.1
RHH5246_R3618 118.7
RHH5275_R3647 867.5
Plasmablast
nTPM: 458.7
Samples: 4

Max nTPM: 637.0
Min nTPM: 266.3
RHH5312_R3679 471.1
RHH5220_R3592 266.3
RHH5249_R3621 460.3
RHH5278_R3650 637.0
Switched memory B-cell
nTPM: 371.0
Samples: 4

Max nTPM: 643.8
Min nTPM: 267.5
RHH5311_R3678 267.5
RHH5219_R3591 301.3
RHH5248_R3620 271.2
RHH5277_R3649 643.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

469.9
Schmiedel sample id TPM
Naive B-cell
TPM: 469.9
Samples: 91

Max TPM: 709.2
Min TPM: 244.9
B_CELL_NAIVE_1 709.2
B_CELL_NAIVE_2 619.7
B_CELL_NAIVE_3 599.6
B_CELL_NAIVE_4 598.5
B_CELL_NAIVE_5 598.4
B_CELL_NAIVE_6 583.6
B_CELL_NAIVE_7 581.3
B_CELL_NAIVE_8 580.3
B_CELL_NAIVE_9 572.6
B_CELL_NAIVE_10 549.4
B_CELL_NAIVE_11 542.6
B_CELL_NAIVE_12 538.8
B_CELL_NAIVE_13 537.7
B_CELL_NAIVE_14 535.7
B_CELL_NAIVE_15 531.4
B_CELL_NAIVE_16 524.9
B_CELL_NAIVE_17 521.0
B_CELL_NAIVE_18 520.5
B_CELL_NAIVE_19 520.4
B_CELL_NAIVE_20 520.4
B_CELL_NAIVE_21 519.6
B_CELL_NAIVE_22 519.5
B_CELL_NAIVE_23 518.1
B_CELL_NAIVE_24 517.9
B_CELL_NAIVE_25 517.2
B_CELL_NAIVE_26 516.9
B_CELL_NAIVE_27 513.8
B_CELL_NAIVE_28 513.6
B_CELL_NAIVE_29 513.0
B_CELL_NAIVE_30 512.9
B_CELL_NAIVE_31 511.4
B_CELL_NAIVE_32 506.4
B_CELL_NAIVE_33 506.1
B_CELL_NAIVE_34 505.7
B_CELL_NAIVE_35 503.1
B_CELL_NAIVE_36 502.9
B_CELL_NAIVE_37 501.4
B_CELL_NAIVE_38 500.8
B_CELL_NAIVE_39 497.2
B_CELL_NAIVE_40 496.4
B_CELL_NAIVE_41 495.4
B_CELL_NAIVE_42 494.6
B_CELL_NAIVE_43 493.1
B_CELL_NAIVE_44 491.6
B_CELL_NAIVE_45 482.9
B_CELL_NAIVE_46 481.8
B_CELL_NAIVE_47 480.3
B_CELL_NAIVE_48 479.1
B_CELL_NAIVE_49 478.6
B_CELL_NAIVE_50 478.0
B_CELL_NAIVE_51 477.5
B_CELL_NAIVE_52 474.3
B_CELL_NAIVE_53 472.0
B_CELL_NAIVE_54 471.7
B_CELL_NAIVE_55 470.2
B_CELL_NAIVE_56 470.1
B_CELL_NAIVE_57 467.0
B_CELL_NAIVE_58 465.5
B_CELL_NAIVE_59 465.5
B_CELL_NAIVE_60 465.4
B_CELL_NAIVE_61 461.1
B_CELL_NAIVE_62 458.7
B_CELL_NAIVE_63 457.4
B_CELL_NAIVE_64 455.4
B_CELL_NAIVE_65 438.2
B_CELL_NAIVE_66 438.0
B_CELL_NAIVE_67 432.6
B_CELL_NAIVE_68 430.2
B_CELL_NAIVE_69 427.2
B_CELL_NAIVE_70 426.1
B_CELL_NAIVE_71 420.1
B_CELL_NAIVE_72 419.2
B_CELL_NAIVE_73 413.7
B_CELL_NAIVE_74 408.1
B_CELL_NAIVE_75 404.2
B_CELL_NAIVE_76 402.9
B_CELL_NAIVE_77 398.8
B_CELL_NAIVE_78 391.8
B_CELL_NAIVE_79 372.2
B_CELL_NAIVE_80 361.6
B_CELL_NAIVE_81 348.8
B_CELL_NAIVE_82 341.9
B_CELL_NAIVE_83 334.7
B_CELL_NAIVE_84 333.8
B_CELL_NAIVE_85 325.6
B_CELL_NAIVE_86 293.8
B_CELL_NAIVE_87 292.6
B_CELL_NAIVE_88 292.1
B_CELL_NAIVE_89 253.2
B_CELL_NAIVE_90 248.5
B_CELL_NAIVE_91 244.9
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