A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4466.8
nTPM
Monaco:
588.9
nTPM
Schmiedel:
469.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4466.8
HPA sample
nTPM
Memory B-cell nTPM: 4466.8
Samples: 6
Max nTPM: 5116.8
Min nTPM: 3741.8
P10809_1017
4180.4
P10809_1025
4687.0
P10809_1044
3741.8
P10809_1063
4686.8
P10809_1092
4388.0
P10809_1105
5116.8
Naive B-cell nTPM: 4277.6
Samples: 6
Max nTPM: 5289.1
Min nTPM: 3051.4
P10809_1011
3886.8
P10809_1029
4325.4
P10809_1048
3051.4
P10809_1067
4835.1
P10809_1091
4277.6
P10809_1104
5289.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
588.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 556.5
Samples: 4
Max nTPM: 891.9
Min nTPM: 163.9
RHH5310_R3677
347.1
RHH5218_R3590
163.9
RHH5247_R3619
823.2
RHH5276_R3648
891.9
Naive B-cell nTPM: 588.9
Samples: 4
Max nTPM: 1344.1
Min nTPM: 174.8
RHH5308_R3675
363.9
RHH5216_R3588
174.8
RHH5245_R3617
1344.1
RHH5274_R3646
472.9
Non-switched memory B-cell nTPM: 383.6
Samples: 4
Max nTPM: 867.5
Min nTPM: 118.7
RHH5309_R3676
349.1
RHH5217_R3589
199.1
RHH5246_R3618
118.7
RHH5275_R3647
867.5
Plasmablast nTPM: 458.7
Samples: 4
Max nTPM: 637.0
Min nTPM: 266.3
RHH5312_R3679
471.1
RHH5220_R3592
266.3
RHH5249_R3621
460.3
RHH5278_R3650
637.0
Switched memory B-cell nTPM: 371.0
Samples: 4
Max nTPM: 643.8
Min nTPM: 267.5
RHH5311_R3678
267.5
RHH5219_R3591
301.3
RHH5248_R3620
271.2
RHH5277_R3649
643.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
469.9
Schmiedel sample id
TPM
Naive B-cell TPM: 469.9
Samples: 91
Max TPM: 709.2
Min TPM: 244.9
B_CELL_NAIVE_1
709.2
B_CELL_NAIVE_2
619.7
B_CELL_NAIVE_3
599.6
B_CELL_NAIVE_4
598.5
B_CELL_NAIVE_5
598.4
B_CELL_NAIVE_6
583.6
B_CELL_NAIVE_7
581.3
B_CELL_NAIVE_8
580.3
B_CELL_NAIVE_9
572.6
B_CELL_NAIVE_10
549.4
B_CELL_NAIVE_11
542.6
B_CELL_NAIVE_12
538.8
B_CELL_NAIVE_13
537.7
B_CELL_NAIVE_14
535.7
B_CELL_NAIVE_15
531.4
B_CELL_NAIVE_16
524.9
B_CELL_NAIVE_17
521.0
B_CELL_NAIVE_18
520.5
B_CELL_NAIVE_19
520.4
B_CELL_NAIVE_20
520.4
B_CELL_NAIVE_21
519.6
B_CELL_NAIVE_22
519.5
B_CELL_NAIVE_23
518.1
B_CELL_NAIVE_24
517.9
B_CELL_NAIVE_25
517.2
B_CELL_NAIVE_26
516.9
B_CELL_NAIVE_27
513.8
B_CELL_NAIVE_28
513.6
B_CELL_NAIVE_29
513.0
B_CELL_NAIVE_30
512.9
B_CELL_NAIVE_31
511.4
B_CELL_NAIVE_32
506.4
B_CELL_NAIVE_33
506.1
B_CELL_NAIVE_34
505.7
B_CELL_NAIVE_35
503.1
B_CELL_NAIVE_36
502.9
B_CELL_NAIVE_37
501.4
B_CELL_NAIVE_38
500.8
B_CELL_NAIVE_39
497.2
B_CELL_NAIVE_40
496.4
B_CELL_NAIVE_41
495.4
B_CELL_NAIVE_42
494.6
B_CELL_NAIVE_43
493.1
B_CELL_NAIVE_44
491.6
B_CELL_NAIVE_45
482.9
B_CELL_NAIVE_46
481.8
B_CELL_NAIVE_47
480.3
B_CELL_NAIVE_48
479.1
B_CELL_NAIVE_49
478.6
B_CELL_NAIVE_50
478.0
B_CELL_NAIVE_51
477.5
B_CELL_NAIVE_52
474.3
B_CELL_NAIVE_53
472.0
B_CELL_NAIVE_54
471.7
B_CELL_NAIVE_55
470.2
B_CELL_NAIVE_56
470.1
B_CELL_NAIVE_57
467.0
B_CELL_NAIVE_58
465.5
B_CELL_NAIVE_59
465.5
B_CELL_NAIVE_60
465.4
B_CELL_NAIVE_61
461.1
B_CELL_NAIVE_62
458.7
B_CELL_NAIVE_63
457.4
B_CELL_NAIVE_64
455.4
B_CELL_NAIVE_65
438.2
B_CELL_NAIVE_66
438.0
B_CELL_NAIVE_67
432.6
B_CELL_NAIVE_68
430.2
B_CELL_NAIVE_69
427.2
B_CELL_NAIVE_70
426.1
B_CELL_NAIVE_71
420.1
B_CELL_NAIVE_72
419.2
B_CELL_NAIVE_73
413.7
B_CELL_NAIVE_74
408.1
B_CELL_NAIVE_75
404.2
B_CELL_NAIVE_76
402.9
B_CELL_NAIVE_77
398.8
B_CELL_NAIVE_78
391.8
B_CELL_NAIVE_79
372.2
B_CELL_NAIVE_80
361.6
B_CELL_NAIVE_81
348.8
B_CELL_NAIVE_82
341.9
B_CELL_NAIVE_83
334.7
B_CELL_NAIVE_84
333.8
B_CELL_NAIVE_85
325.6
B_CELL_NAIVE_86
293.8
B_CELL_NAIVE_87
292.6
B_CELL_NAIVE_88
292.1
B_CELL_NAIVE_89
253.2
B_CELL_NAIVE_90
248.5
B_CELL_NAIVE_91
244.9
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