A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2733.5
nTPM
Monaco:
204.5
nTPM
Schmiedel:
361.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2733.5
HPA sample
nTPM
NK-cell nTPM: 2733.5
Samples: 6
Max nTPM: 3319.5
Min nTPM: 1746.3
P10809_1013
2456.6
P10809_1033
3152.8
P10809_1052
2770.1
P10809_1071
2955.6
P10809_1093
1746.3
P10809_1103
3319.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
204.5
Monaco sample
nTPM
NK-cell nTPM: 204.5
Samples: 4
Max nTPM: 274.5
Min nTPM: 162.9
RHH5316_R3683
168.5
RHH5224_R3596
162.9
RHH5253_R3625
274.5
RHH5282_R3654
212.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
361.7
Schmiedel sample id
TPM
NK-cell TPM: 361.7
Samples: 90
Max TPM: 624.2
Min TPM: 237.6
NK_1
624.2
NK_2
483.3
NK_3
478.3
NK_4
470.4
NK_5
457.6
NK_6
447.5
NK_7
443.3
NK_8
431.0
NK_9
427.2
NK_10
425.6
NK_11
421.2
NK_12
420.8
NK_13
419.2
NK_14
419.1
NK_15
418.4
NK_16
415.9
NK_17
415.7
NK_18
414.8
NK_19
409.7
NK_20
408.9
NK_21
402.5
NK_22
398.8
NK_23
397.8
NK_24
397.2
NK_25
391.8
NK_26
389.0
NK_27
387.9
NK_28
383.7
NK_29
383.0
NK_30
382.1
NK_31
381.9
NK_32
381.2
NK_33
380.4
NK_34
379.6
NK_35
378.6
NK_36
376.5
NK_37
372.9
NK_38
371.8
NK_39
370.9
NK_40
370.4
NK_41
370.3
NK_42
369.1
NK_43
368.3
NK_44
365.9
NK_45
365.6
NK_46
363.0
NK_47
361.1
NK_48
361.0
NK_49
358.3
NK_50
357.5
NK_51
356.5
NK_52
352.9
NK_53
352.6
NK_54
352.2
NK_55
350.0
NK_56
347.2
NK_57
344.0
NK_58
343.0
NK_59
338.9
NK_60
335.5
NK_61
335.4
NK_62
335.1
NK_63
330.3
NK_64
328.3
NK_65
327.1
NK_66
326.8
NK_67
325.8
NK_68
322.9
NK_69
321.0
NK_70
319.4
NK_71
306.9
NK_72
306.2
NK_73
304.0
NK_74
300.9
NK_75
300.8
NK_76
298.1
NK_77
294.9
NK_78
292.8
NK_79
292.1
NK_80
291.4
NK_81
289.7
NK_82
286.0
NK_83
277.5
NK_84
269.2
NK_85
263.9
NK_86
261.1
NK_87
259.3
NK_88
257.0
NK_89
250.6
NK_90
237.6
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