A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2316.4
nTPM
Monaco:
337.8
nTPM
Schmiedel:
312.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2316.4
HPA sample
nTPM
Classical monocyte nTPM: 2316.4
Samples: 6
Max nTPM: 3855.9
Min nTPM: 1586.5
P10809_1003
3855.9
P10809_1020
1740.0
P10809_1039
1751.8
P10809_1058
2182.8
P10809_1080
1586.5
P10809_1107
2781.5
Intermediate monocyte nTPM: 1727.1
Samples: 6
Max nTPM: 2775.5
Min nTPM: 1182.2
P10809_1004
1348.1
P10809_1023
1854.4
P10809_1042
1664.9
P10809_1061
1182.2
P10809_1081
1537.5
P10809_1108
2775.5
Non-classical monocyte nTPM: 1479.3
Samples: 5
Max nTPM: 2183.5
Min nTPM: 1005.2
P10809_1005
1511.8
P10809_1053
1330.8
P10809_1072
1005.2
P10809_1082
1365.4
P10809_1109
2183.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
337.8
Monaco sample
nTPM
Classical monocyte nTPM: 215.9
Samples: 4
Max nTPM: 277.8
Min nTPM: 165.2
RHH5313_R3680
277.8
RHH5221_R3593
175.1
RHH5250_R3622
165.2
RHH5279_R3651
245.5
Intermediate monocyte nTPM: 337.8
Samples: 4
Max nTPM: 471.2
Min nTPM: 188.8
RHH5314_R3681
223.6
RHH5222_R3594
471.2
RHH5251_R3623
467.5
RHH5280_R3652
188.8
Non-classical monocyte nTPM: 236.9
Samples: 4
Max nTPM: 319.3
Min nTPM: 102.5
RHH5315_R3682
240.2
RHH5223_R3595
285.6
RHH5252_R3624
319.3
RHH5281_R3653
102.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
312.6
Schmiedel sample id
TPM
Classical monocyte TPM: 312.6
Samples: 91
Max TPM: 419.7
Min TPM: 242.2
MONOCYTES_1
419.7
MONOCYTES_2
381.8
MONOCYTES_3
364.9
MONOCYTES_4
364.4
MONOCYTES_5
359.4
MONOCYTES_6
359.1
MONOCYTES_7
357.0
MONOCYTES_8
353.8
MONOCYTES_9
353.4
MONOCYTES_10
350.2
MONOCYTES_11
348.8
MONOCYTES_12
347.5
MONOCYTES_13
345.3
MONOCYTES_14
345.0
MONOCYTES_15
344.2
MONOCYTES_16
343.5
MONOCYTES_17
343.0
MONOCYTES_18
342.2
MONOCYTES_19
341.7
MONOCYTES_20
341.3
MONOCYTES_21
340.1
MONOCYTES_22
338.7
MONOCYTES_23
338.3
MONOCYTES_24
338.0
MONOCYTES_25
338.0
MONOCYTES_26
336.1
MONOCYTES_27
334.3
MONOCYTES_28
332.8
MONOCYTES_29
332.6
MONOCYTES_30
332.6
MONOCYTES_31
331.8
MONOCYTES_32
330.2
MONOCYTES_33
329.8
MONOCYTES_34
326.5
MONOCYTES_35
324.5
MONOCYTES_36
324.1
MONOCYTES_37
320.5
MONOCYTES_38
319.7
MONOCYTES_39
319.1
MONOCYTES_40
318.7
MONOCYTES_41
318.6
MONOCYTES_42
318.4
MONOCYTES_43
317.0
MONOCYTES_44
316.6
MONOCYTES_45
315.8
MONOCYTES_46
314.1
MONOCYTES_47
313.6
MONOCYTES_48
313.4
MONOCYTES_49
311.1
MONOCYTES_50
310.6
MONOCYTES_51
310.4
MONOCYTES_52
310.3
MONOCYTES_53
308.9
MONOCYTES_54
305.7
MONOCYTES_55
303.5
MONOCYTES_56
302.8
MONOCYTES_57
302.0
MONOCYTES_58
302.0
MONOCYTES_59
298.8
MONOCYTES_60
298.1
MONOCYTES_61
296.6
MONOCYTES_62
296.4
MONOCYTES_63
295.3
MONOCYTES_64
294.7
MONOCYTES_65
292.5
MONOCYTES_66
289.3
MONOCYTES_67
289.2
MONOCYTES_68
288.1
MONOCYTES_69
287.3
MONOCYTES_70
286.9
MONOCYTES_71
285.9
MONOCYTES_72
283.6
MONOCYTES_73
282.6
MONOCYTES_74
280.2
MONOCYTES_75
278.2
MONOCYTES_76
276.8
MONOCYTES_77
275.6
MONOCYTES_78
272.4
MONOCYTES_79
270.7
MONOCYTES_80
269.0
MONOCYTES_81
268.2
MONOCYTES_82
267.6
MONOCYTES_83
266.6
MONOCYTES_84
266.5
MONOCYTES_85
262.6
MONOCYTES_86
259.9
MONOCYTES_87
257.6
MONOCYTES_88
257.4
MONOCYTES_89
256.9
MONOCYTES_90
247.9
MONOCYTES_91
242.2
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Non-classical monocyte TPM: 213.8
Samples: 90
Max TPM: 273.7
Min TPM: 121.8
M2_1
273.7
M2_2
271.1
M2_3
270.5
M2_4
259.2
M2_5
251.8
M2_6
251.1
M2_7
250.2
M2_8
246.3
M2_9
245.8
M2_10
244.6
M2_11
242.5
M2_12
242.1
M2_13
241.4
M2_14
240.5
M2_15
239.7
M2_16
238.8
M2_17
238.6
M2_18
236.5
M2_19
236.2
M2_20
235.5
M2_21
232.3
M2_22
232.0
M2_23
231.7
M2_24
228.9
M2_25
228.8
M2_26
227.3
M2_27
226.3
M2_28
224.4
M2_29
224.0
M2_30
223.7
M2_31
223.0
M2_32
222.9
M2_33
222.2
M2_34
221.8
M2_35
221.6
M2_36
221.5
M2_37
220.9
M2_38
220.0
M2_39
219.2
M2_40
219.2
M2_41
219.2
M2_42
218.3
M2_43
217.8
M2_44
217.8
M2_45
217.4
M2_46
216.5
M2_47
215.0
M2_48
214.8
M2_49
214.7
M2_50
212.4
M2_51
211.7
M2_52
211.6
M2_53
211.4
M2_54
209.6
M2_55
209.5
M2_56
207.9
M2_57
207.3
M2_58
205.7
M2_59
205.2
M2_60
204.9
M2_61
204.2
M2_62
203.1
M2_63
202.8
M2_64
202.6
M2_65
202.0
M2_66
201.6
M2_67
201.5
M2_68
199.4
M2_69
198.0
M2_70
197.6
M2_71
196.2
M2_72
195.6
M2_73
194.9
M2_74
193.7
M2_75
190.8
M2_76
189.2
M2_77
189.0
M2_78
186.4
M2_79
184.0
M2_80
181.5
M2_81
178.8
M2_82
177.6
M2_83
174.6
M2_84
172.8
M2_85
169.2
M2_86
165.9
M2_87
157.4
M2_88
157.0
M2_89
152.4
M2_90
121.8
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