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S100A6
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  • S100A6
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:447.1 nTPM
HPA Brain:141.8 nTPM
GTEx:447.1 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:33.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.8
Sample id Sample description nTPM
Amygdala
nTPM: 141.8
1987 Female, age 91, left hemisphere 180.0
2695 Female, age 67, right hemisphere 174.8
2814 Male, age 76, right hemisphere 138.1
2514 Male, age 75, right hemisphere 108.3
2517 Female, age 94, left hemisphere 108.0
Basal amygdala
nTPM: 98.0
2110 Male, age 80, left hemisphere 125.4
1955 Male, age 76, both hemispheres 124.4
2609 Male, age 75, right hemisphere 92.1
2243 Female, age 91, right hemisphere 88.7
2685 Female, age 94, left hemisphere 87.1
2827 Female, age 67, right hemisphere 70.4
Central amygdala
nTPM: 129.1
2515 Male, age 75, right hemisphere 178.9
2826 Female, age 94, left hemisphere 142.3
1905 Male, age 76, both hemispheres 135.7
2239 Male, age 80, left hemisphere 102.1
2701 Female, age 91, right hemisphere 86.7
Corticomedial amygdala
nTPM: 111.8
2242 Female, age 91, right hemisphere 142.8
2240 Male, age 76, both hemispheres 126.5
2829 Male, age 80, left hemisphere 124.6
2428 Male, age 75, right hemisphere 106.6
2429 Female, age 94, left hemisphere 87.9
2535 Female, age 67, right hemisphere 82.3
Lateral amygdala
nTPM: 102.2
2256 Male, age 80, left hemisphere 122.7
1883 Male, age 76, both hemispheres 109.8
2534 Female, age 94, left hemisphere 106.7
2516 Male, age 75, right hemisphere 105.0
2830 Female, age 67, right hemisphere 88.3
2255 Female, age 91, right hemisphere 80.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

447.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 447.1
Samples: 181

Max nTPM: 1398.6
Min nTPM: 180.1
Std nTPM: 202.7
Median nTPM: 396.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1398.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1388.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1294.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1046.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1031.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 953.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 863.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 857.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 838.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 817.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 769.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 768.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 759.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 757.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 739.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 737.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 723.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 709.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 703.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 691.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 666.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 663.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 661.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 659.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 655.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 633.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 608.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 605.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 602.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 591.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 591.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 586.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 581.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 560.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 557.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 547.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 546.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 543.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 538.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 534.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 529.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 526.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 525.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 521.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 520.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 520.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 507.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 496.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 495.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 495.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 491.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 489.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 489.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 486.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 482.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 480.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 475.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 474.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 473.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 467.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 458.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 456.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 454.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 452.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 450.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 449.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 447.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 445.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 445.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 437.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 435.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 434.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 431.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 429.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 429.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 427.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 427.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 426.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 425.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 424.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 424.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 420.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 416.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 416.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 413.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 412.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 411.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 398.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 396.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 396.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 396.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 391.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 388.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 387.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 385.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 382.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 380.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 378.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 376.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 374.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 371.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 369.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 364.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 363.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 362.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 361.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 361.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 358.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 358.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 357.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 355.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 355.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 355.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 354.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 351.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 348.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 347.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 346.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 343.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 342.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 341.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 340.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 339.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 339.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 338.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 337.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 335.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 334.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 332.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 331.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 330.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 328.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 325.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 325.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 321.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 320.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 320.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 317.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 317.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 306.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 304.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 303.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 303.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 303.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 299.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 299.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 297.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 295.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 294.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 293.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 288.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 286.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 285.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 285.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 281.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 280.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 279.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 273.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 272.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 269.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 265.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 261.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 259.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 257.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 257.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 253.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 252.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 252.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 251.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 246.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 244.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 244.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 229.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 224.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 222.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 222.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 209.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 201.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 197.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 180.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.4
FF:10151-102I7 76 years, female 26.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.0
Pig sample Sample description nTPM
Amygdala
nTPM: 30.0
Samples: 4

Max nTPM: 45.2
Min nTPM: 22.6
Sample A Female 45.2
Sample B Female 26.2
Sample C Male 25.9
Sample D Male 22.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.2
Samples: 4

Max nTPM: 36.7
Min nTPM: 31.8
Sample A Male 32.0
Sample B Male 31.8
Sample C Female 36.7
Sample D Female 32.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
75695667 Antisense, RP_060518_04_D06, Mouse strain C57BL/6J (56 days, male) 0.1
77278967 Antisense, RP_070116_01_A03, Mouse strain C57BL/6J (56 days, male) 0.0

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