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S100A6
HPA
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  • TISSUE

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  • S100A6
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Medium
Goblet cells: Not detected
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1641.8 nTPM
HPA:1285.5 nTPM
GTEx:1641.8 nTPM
FANTOM5:361.7 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007575Antibody CAB002601Antibody CAB040549
Endocrine cells Medium--
Enterocytes Medium--
Enterocytes - Microvilli Medium--
Glandular cells -MediumMedium
Goblet cells Not detected--
Paneth cells Medium--




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1285.5
overview
Male, age 65
Small intestine sample 232
nTPM: 1267.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1813.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 900.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1160.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1641.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1641.8
Samples: 207

Max nTPM: 4282.0
Min nTPM: 575.2
Std nTPM: 626.8
Median nTPM: 1560.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 4282.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 4035.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3388.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3129.2
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 3066.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2925.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2907.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2892.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2862.3
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2842.6
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2770.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2752.8
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 2731.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2685.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2641.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2614.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2601.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2599.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2557.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2505.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2504.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2475.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2459.0
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 2449.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2443.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 2418.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2412.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2402.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2397.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2375.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2369.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2312.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2308.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2293.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2234.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2214.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 2158.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 2098.1
GTEX-1192X-2526-SM-59868 50-59 years, male 2085.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2083.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2081.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2074.9
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 2067.3
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2052.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2046.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2044.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2032.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2019.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2003.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2001.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1986.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1985.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1962.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1958.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1945.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1942.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1941.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1928.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1916.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1912.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1907.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1905.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1904.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1900.0
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1896.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1887.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1884.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1861.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1857.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1854.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1853.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1832.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1820.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1819.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1805.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1793.3
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1786.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1779.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1775.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1761.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1736.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1730.8
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1726.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1708.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1700.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1686.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1684.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1679.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1673.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1642.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1642.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1628.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1624.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1613.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1608.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1606.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1592.5
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1587.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1581.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1575.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1572.0
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1571.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1561.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1560.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1552.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1547.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1525.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1498.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1492.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1479.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1467.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1452.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1441.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1439.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1427.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1422.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1411.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1404.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1395.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1394.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1384.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1382.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1378.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1378.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1374.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1373.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1349.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1347.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1344.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1341.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1340.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1336.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1315.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1315.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1312.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1312.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1303.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1300.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1295.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1280.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1279.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1271.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1243.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1239.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1233.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1232.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1232.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1209.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1208.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1208.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1194.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1193.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1192.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1180.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1175.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1174.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1166.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1164.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1145.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1138.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1133.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1114.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1101.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1098.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1095.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1092.0
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1091.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1091.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1079.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1074.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1074.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1071.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1070.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1053.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1041.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1034.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1013.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 1009.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1004.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1000.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 977.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 972.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 970.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 962.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 959.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 958.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 939.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 938.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 936.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 917.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 913.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 911.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 910.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 904.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 898.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 887.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 846.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 811.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 806.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 762.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 758.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 729.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 725.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 719.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 661.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 579.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 575.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

361.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 361.7
FF:10024-101D6 15,40,85 years, mixed 361.7

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