A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2725.8
nTPM
Monaco:
623.9
nTPM
Schmiedel:
649.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2725.8
HPA sample
nTPM
Memory B-cell nTPM: 2725.8
Samples: 6
Max nTPM: 3604.5
Min nTPM: 2235.9
P10809_1017
2460.0
P10809_1025
2235.9
P10809_1044
3604.5
P10809_1063
2776.3
P10809_1092
2782.9
P10809_1105
2495.0
Naive B-cell nTPM: 2613.9
Samples: 6
Max nTPM: 3218.0
Min nTPM: 2123.2
P10809_1011
2304.5
P10809_1029
2123.2
P10809_1048
3218.0
P10809_1067
2846.8
P10809_1091
2725.7
P10809_1104
2465.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
623.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 623.9
Samples: 4
Max nTPM: 1065.1
Min nTPM: 224.5
RHH5310_R3677
593.2
RHH5218_R3590
224.5
RHH5247_R3619
1065.1
RHH5276_R3648
612.8
Naive B-cell nTPM: 611.9
Samples: 4
Max nTPM: 987.6
Min nTPM: 313.5
RHH5308_R3675
753.8
RHH5216_R3588
313.5
RHH5245_R3617
987.6
RHH5274_R3646
392.7
Non-switched memory B-cell nTPM: 460.1
Samples: 4
Max nTPM: 671.7
Min nTPM: 277.4
RHH5309_R3676
671.7
RHH5217_R3589
277.4
RHH5246_R3618
330.6
RHH5275_R3647
560.8
Plasmablast nTPM: 422.8
Samples: 4
Max nTPM: 576.6
Min nTPM: 288.3
RHH5312_R3679
576.6
RHH5220_R3592
288.3
RHH5249_R3621
449.6
RHH5278_R3650
376.8
Switched memory B-cell nTPM: 477.1
Samples: 4
Max nTPM: 685.6
Min nTPM: 354.5
RHH5311_R3678
685.6
RHH5219_R3591
403.6
RHH5248_R3620
354.5
RHH5277_R3649
464.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
649.5
Schmiedel sample id
TPM
Naive B-cell TPM: 649.5
Samples: 91
Max TPM: 848.3
Min TPM: 412.8
B_CELL_NAIVE_1
848.3
B_CELL_NAIVE_2
819.5
B_CELL_NAIVE_3
810.8
B_CELL_NAIVE_4
781.7
B_CELL_NAIVE_5
773.9
B_CELL_NAIVE_6
771.3
B_CELL_NAIVE_7
769.9
B_CELL_NAIVE_8
764.3
B_CELL_NAIVE_9
763.1
B_CELL_NAIVE_10
754.4
B_CELL_NAIVE_11
753.0
B_CELL_NAIVE_12
752.4
B_CELL_NAIVE_13
751.7
B_CELL_NAIVE_14
742.1
B_CELL_NAIVE_15
741.5
B_CELL_NAIVE_16
741.2
B_CELL_NAIVE_17
738.0
B_CELL_NAIVE_18
732.9
B_CELL_NAIVE_19
721.4
B_CELL_NAIVE_20
717.9
B_CELL_NAIVE_21
709.8
B_CELL_NAIVE_22
709.6
B_CELL_NAIVE_23
705.9
B_CELL_NAIVE_24
701.7
B_CELL_NAIVE_25
700.2
B_CELL_NAIVE_26
698.0
B_CELL_NAIVE_27
697.9
B_CELL_NAIVE_28
694.8
B_CELL_NAIVE_29
693.1
B_CELL_NAIVE_30
692.4
B_CELL_NAIVE_31
691.3
B_CELL_NAIVE_32
690.6
B_CELL_NAIVE_33
688.6
B_CELL_NAIVE_34
684.9
B_CELL_NAIVE_35
683.2
B_CELL_NAIVE_36
682.5
B_CELL_NAIVE_37
667.1
B_CELL_NAIVE_38
666.3
B_CELL_NAIVE_39
665.4
B_CELL_NAIVE_40
664.9
B_CELL_NAIVE_41
664.7
B_CELL_NAIVE_42
662.1
B_CELL_NAIVE_43
658.0
B_CELL_NAIVE_44
657.4
B_CELL_NAIVE_45
655.2
B_CELL_NAIVE_46
646.1
B_CELL_NAIVE_47
643.9
B_CELL_NAIVE_48
643.2
B_CELL_NAIVE_49
637.6
B_CELL_NAIVE_50
634.5
B_CELL_NAIVE_51
634.3
B_CELL_NAIVE_52
633.0
B_CELL_NAIVE_53
632.1
B_CELL_NAIVE_54
631.1
B_CELL_NAIVE_55
629.4
B_CELL_NAIVE_56
627.4
B_CELL_NAIVE_57
626.8
B_CELL_NAIVE_58
626.2
B_CELL_NAIVE_59
620.8
B_CELL_NAIVE_60
618.7
B_CELL_NAIVE_61
614.0
B_CELL_NAIVE_62
608.8
B_CELL_NAIVE_63
603.6
B_CELL_NAIVE_64
603.3
B_CELL_NAIVE_65
602.8
B_CELL_NAIVE_66
602.3
B_CELL_NAIVE_67
601.8
B_CELL_NAIVE_68
587.0
B_CELL_NAIVE_69
583.3
B_CELL_NAIVE_70
581.2
B_CELL_NAIVE_71
575.4
B_CELL_NAIVE_72
573.5
B_CELL_NAIVE_73
573.1
B_CELL_NAIVE_74
572.8
B_CELL_NAIVE_75
566.9
B_CELL_NAIVE_76
566.1
B_CELL_NAIVE_77
563.9
B_CELL_NAIVE_78
557.4
B_CELL_NAIVE_79
557.3
B_CELL_NAIVE_80
555.7
B_CELL_NAIVE_81
552.2
B_CELL_NAIVE_82
548.7
B_CELL_NAIVE_83
547.9
B_CELL_NAIVE_84
547.6
B_CELL_NAIVE_85
536.0
B_CELL_NAIVE_86
510.7
B_CELL_NAIVE_87
505.9
B_CELL_NAIVE_88
497.6
B_CELL_NAIVE_89
494.2
B_CELL_NAIVE_90
482.7
B_CELL_NAIVE_91
412.8
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