A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
985.0
nTPM
Monaco:
376.4
nTPM
Schmiedel:
329.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
985.0
HPA sample
nTPM
Classical monocyte nTPM: 964.5
Samples: 6
Max nTPM: 1749.5
Min nTPM: 670.2
P10809_1003
1749.5
P10809_1020
670.2
P10809_1039
822.6
P10809_1058
892.9
P10809_1080
686.0
P10809_1107
965.7
Intermediate monocyte nTPM: 984.9
Samples: 6
Max nTPM: 1385.5
Min nTPM: 640.8
P10809_1004
921.2
P10809_1023
1061.4
P10809_1042
1022.1
P10809_1061
640.8
P10809_1081
878.7
P10809_1108
1385.5
Non-classical monocyte nTPM: 978.8
Samples: 5
Max nTPM: 1223.6
Min nTPM: 814.5
P10809_1005
1185.1
P10809_1053
814.5
P10809_1072
834.2
P10809_1082
836.5
P10809_1109
1223.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
376.4
Monaco sample
nTPM
Classical monocyte nTPM: 213.1
Samples: 4
Max nTPM: 282.5
Min nTPM: 150.8
RHH5313_R3680
282.5
RHH5221_R3593
150.8
RHH5250_R3622
211.1
RHH5279_R3651
208.1
Intermediate monocyte nTPM: 376.3
Samples: 4
Max nTPM: 414.2
Min nTPM: 276.8
RHH5314_R3681
411.9
RHH5222_R3594
414.2
RHH5251_R3623
402.5
RHH5280_R3652
276.8
Non-classical monocyte nTPM: 269.2
Samples: 4
Max nTPM: 350.4
Min nTPM: 206.6
RHH5315_R3682
350.4
RHH5223_R3595
255.2
RHH5252_R3624
264.4
RHH5281_R3653
206.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
329.7
Schmiedel sample id
TPM
Classical monocyte TPM: 329.7
Samples: 91
Max TPM: 412.4
Min TPM: 243.5
MONOCYTES_1
412.4
MONOCYTES_2
400.9
MONOCYTES_3
397.3
MONOCYTES_4
396.9
MONOCYTES_5
393.1
MONOCYTES_6
385.2
MONOCYTES_7
382.8
MONOCYTES_8
380.9
MONOCYTES_9
380.7
MONOCYTES_10
378.4
MONOCYTES_11
376.9
MONOCYTES_12
375.3
MONOCYTES_13
370.0
MONOCYTES_14
366.6
MONOCYTES_15
364.5
MONOCYTES_16
364.2
MONOCYTES_17
363.9
MONOCYTES_18
362.7
MONOCYTES_19
361.2
MONOCYTES_20
361.2
MONOCYTES_21
361.0
MONOCYTES_22
358.3
MONOCYTES_23
357.1
MONOCYTES_24
355.6
MONOCYTES_25
355.6
MONOCYTES_26
354.4
MONOCYTES_27
353.7
MONOCYTES_28
353.2
MONOCYTES_29
352.7
MONOCYTES_30
352.0
MONOCYTES_31
351.2
MONOCYTES_32
349.7
MONOCYTES_33
348.5
MONOCYTES_34
347.9
MONOCYTES_35
346.5
MONOCYTES_36
346.0
MONOCYTES_37
343.4
MONOCYTES_38
339.8
MONOCYTES_39
338.2
MONOCYTES_40
335.9
MONOCYTES_41
335.4
MONOCYTES_42
333.9
MONOCYTES_43
331.1
MONOCYTES_44
328.7
MONOCYTES_45
328.1
MONOCYTES_46
327.4
MONOCYTES_47
327.2
MONOCYTES_48
326.8
MONOCYTES_49
325.5
MONOCYTES_50
323.4
MONOCYTES_51
323.3
MONOCYTES_52
322.8
MONOCYTES_53
319.8
MONOCYTES_54
319.5
MONOCYTES_55
316.9
MONOCYTES_56
316.9
MONOCYTES_57
316.6
MONOCYTES_58
314.6
MONOCYTES_59
313.7
MONOCYTES_60
311.9
MONOCYTES_61
311.3
MONOCYTES_62
311.1
MONOCYTES_63
311.0
MONOCYTES_64
310.9
MONOCYTES_65
310.8
MONOCYTES_66
307.6
MONOCYTES_67
307.2
MONOCYTES_68
305.2
MONOCYTES_69
303.9
MONOCYTES_70
300.0
MONOCYTES_71
298.3
MONOCYTES_72
298.0
MONOCYTES_73
297.2
MONOCYTES_74
297.0
MONOCYTES_75
295.8
MONOCYTES_76
293.7
MONOCYTES_77
293.6
MONOCYTES_78
291.0
MONOCYTES_79
288.4
MONOCYTES_80
286.0
MONOCYTES_81
284.1
MONOCYTES_82
283.8
MONOCYTES_83
283.7
MONOCYTES_84
281.0
MONOCYTES_85
275.0
MONOCYTES_86
270.6
MONOCYTES_87
263.3
MONOCYTES_88
257.1
MONOCYTES_89
255.9
MONOCYTES_90
247.5
MONOCYTES_91
243.5
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Non-classical monocyte TPM: 329.1
Samples: 90
Max TPM: 436.0
Min TPM: 247.6
M2_1
436.0
M2_2
411.8
M2_3
402.3
M2_4
400.6
M2_5
399.4
M2_6
395.1
M2_7
381.8
M2_8
381.1
M2_9
380.4
M2_10
379.7
M2_11
379.3
M2_12
377.5
M2_13
373.4
M2_14
373.3
M2_15
370.5
M2_16
363.9
M2_17
363.8
M2_18
361.5
M2_19
357.9
M2_20
357.8
M2_21
357.6
M2_22
356.5
M2_23
349.6
M2_24
345.4
M2_25
345.0
M2_26
343.6
M2_27
343.3
M2_28
342.3
M2_29
341.4
M2_30
339.7
M2_31
336.8
M2_32
336.4
M2_33
335.1
M2_34
334.8
M2_35
334.1
M2_36
333.5
M2_37
333.0
M2_38
333.0
M2_39
332.7
M2_40
331.5
M2_41
331.0
M2_42
330.3
M2_43
326.5
M2_44
326.0
M2_45
324.9
M2_46
324.4
M2_47
324.0
M2_48
323.7
M2_49
323.0
M2_50
321.5
M2_51
321.5
M2_52
320.7
M2_53
320.5
M2_54
320.3
M2_55
318.9
M2_56
318.9
M2_57
318.9
M2_58
318.5
M2_59
316.6
M2_60
312.9
M2_61
312.0
M2_62
311.3
M2_63
309.2
M2_64
307.3
M2_65
302.7
M2_66
301.4
M2_67
301.1
M2_68
300.2
M2_69
299.5
M2_70
299.3
M2_71
298.9
M2_72
298.2
M2_73
297.6
M2_74
295.8
M2_75
295.2
M2_76
295.1
M2_77
294.5
M2_78
292.4
M2_79
288.2
M2_80
288.1
M2_81
284.7
M2_82
282.1
M2_83
277.7
M2_84
277.5
M2_85
276.0
M2_86
274.1
M2_87
273.6
M2_88
272.8
M2_89
268.2
M2_90
247.6
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