A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1269.2
nTPM
Monaco:
174.1
nTPM
Schmiedel:
342.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1269.2
HPA sample
nTPM
NK-cell nTPM: 1269.2
Samples: 6
Max nTPM: 1552.6
Min nTPM: 1052.1
P10809_1013
1237.6
P10809_1033
1410.2
P10809_1052
1130.9
P10809_1071
1552.6
P10809_1093
1052.1
P10809_1103
1231.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
174.1
Monaco sample
nTPM
NK-cell nTPM: 174.1
Samples: 4
Max nTPM: 189.1
Min nTPM: 156.2
RHH5316_R3683
189.1
RHH5224_R3596
156.2
RHH5253_R3625
179.5
RHH5282_R3654
171.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
342.5
Schmiedel sample id
TPM
NK-cell TPM: 342.5
Samples: 90
Max TPM: 528.8
Min TPM: 236.0
NK_1
528.8
NK_2
512.6
NK_3
453.5
NK_4
432.8
NK_5
422.2
NK_6
417.9
NK_7
402.7
NK_8
402.7
NK_9
399.7
NK_10
399.3
NK_11
398.0
NK_12
395.6
NK_13
393.8
NK_14
393.2
NK_15
390.7
NK_16
388.3
NK_17
387.8
NK_18
386.3
NK_19
385.8
NK_20
383.4
NK_21
380.4
NK_22
379.6
NK_23
376.6
NK_24
373.3
NK_25
373.1
NK_26
372.5
NK_27
366.7
NK_28
365.3
NK_29
361.5
NK_30
358.9
NK_31
358.6
NK_32
357.0
NK_33
356.9
NK_34
356.5
NK_35
356.0
NK_36
353.3
NK_37
353.0
NK_38
352.8
NK_39
352.0
NK_40
350.1
NK_41
349.5
NK_42
348.7
NK_43
344.9
NK_44
343.7
NK_45
342.3
NK_46
342.2
NK_47
341.0
NK_48
333.5
NK_49
331.5
NK_50
331.3
NK_51
331.2
NK_52
331.1
NK_53
330.9
NK_54
328.0
NK_55
326.3
NK_56
326.2
NK_57
325.5
NK_58
323.4
NK_59
322.6
NK_60
322.1
NK_61
315.7
NK_62
314.3
NK_63
311.7
NK_64
309.4
NK_65
309.2
NK_66
308.1
NK_67
307.5
NK_68
304.6
NK_69
304.5
NK_70
302.2
NK_71
297.2
NK_72
297.1
NK_73
295.4
NK_74
292.8
NK_75
291.1
NK_76
290.4
NK_77
284.4
NK_78
280.4
NK_79
280.1
NK_80
279.2
NK_81
279.0
NK_82
278.2
NK_83
277.9
NK_84
273.9
NK_85
269.6
NK_86
268.2
NK_87
268.2
NK_88
249.4
NK_89
243.8
NK_90
236.0
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