A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2017.8
nTPM
Monaco:
1176.3
nTPM
Schmiedel:
1820.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2017.8
HPA sample
nTPM
Memory B-cell nTPM: 2017.8
Samples: 6
Max nTPM: 3034.8
Min nTPM: 1186.2
P10809_1017
1186.2
P10809_1025
1548.7
P10809_1044
3034.8
P10809_1063
2608.6
P10809_1092
1532.9
P10809_1105
2195.6
Naive B-cell nTPM: 1790.4
Samples: 6
Max nTPM: 3476.0
Min nTPM: 974.9
P10809_1011
974.9
P10809_1029
1169.7
P10809_1048
3476.0
P10809_1067
1977.8
P10809_1091
1331.5
P10809_1104
1812.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1176.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 976.9
Samples: 4
Max nTPM: 1434.0
Min nTPM: 464.2
RHH5310_R3677
1434.0
RHH5218_R3590
464.2
RHH5247_R3619
1139.4
RHH5276_R3648
869.8
Naive B-cell nTPM: 937.7
Samples: 4
Max nTPM: 1528.1
Min nTPM: 607.5
RHH5308_R3675
1528.1
RHH5216_R3588
607.5
RHH5245_R3617
726.8
RHH5274_R3646
888.5
Non-switched memory B-cell nTPM: 1021.6
Samples: 4
Max nTPM: 1584.5
Min nTPM: 659.4
RHH5309_R3676
1584.5
RHH5217_R3589
659.4
RHH5246_R3618
858.0
RHH5275_R3647
984.5
Plasmablast nTPM: 1176.3
Samples: 4
Max nTPM: 1673.1
Min nTPM: 729.1
RHH5312_R3679
1673.1
RHH5220_R3592
729.1
RHH5249_R3621
1017.1
RHH5278_R3650
1285.8
Switched memory B-cell nTPM: 1131.8
Samples: 4
Max nTPM: 2065.2
Min nTPM: 621.9
RHH5311_R3678
2065.2
RHH5219_R3591
929.0
RHH5248_R3620
621.9
RHH5277_R3649
910.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1820.4
Schmiedel sample id
TPM
Naive B-cell TPM: 1820.4
Samples: 91
Max TPM: 2624.4
Min TPM: 1269.0
B_CELL_NAIVE_1
2624.4
B_CELL_NAIVE_2
2471.9
B_CELL_NAIVE_3
2400.9
B_CELL_NAIVE_4
2393.7
B_CELL_NAIVE_5
2372.3
B_CELL_NAIVE_6
2362.1
B_CELL_NAIVE_7
2332.2
B_CELL_NAIVE_8
2325.5
B_CELL_NAIVE_9
2299.6
B_CELL_NAIVE_10
2274.4
B_CELL_NAIVE_11
2237.7
B_CELL_NAIVE_12
2202.2
B_CELL_NAIVE_13
2195.0
B_CELL_NAIVE_14
2185.8
B_CELL_NAIVE_15
2166.3
B_CELL_NAIVE_16
2146.7
B_CELL_NAIVE_17
2131.4
B_CELL_NAIVE_18
2116.8
B_CELL_NAIVE_19
2112.4
B_CELL_NAIVE_20
2098.9
B_CELL_NAIVE_21
2093.9
B_CELL_NAIVE_22
2092.5
B_CELL_NAIVE_23
2082.5
B_CELL_NAIVE_24
2057.5
B_CELL_NAIVE_25
2048.0
B_CELL_NAIVE_26
2041.2
B_CELL_NAIVE_27
2038.8
B_CELL_NAIVE_28
1962.0
B_CELL_NAIVE_29
1960.4
B_CELL_NAIVE_30
1958.1
B_CELL_NAIVE_31
1945.5
B_CELL_NAIVE_32
1942.1
B_CELL_NAIVE_33
1923.8
B_CELL_NAIVE_34
1917.4
B_CELL_NAIVE_35
1895.1
B_CELL_NAIVE_36
1891.2
B_CELL_NAIVE_37
1875.6
B_CELL_NAIVE_38
1855.2
B_CELL_NAIVE_39
1827.5
B_CELL_NAIVE_40
1817.4
B_CELL_NAIVE_41
1787.5
B_CELL_NAIVE_42
1779.6
B_CELL_NAIVE_43
1765.4
B_CELL_NAIVE_44
1763.6
B_CELL_NAIVE_45
1720.9
B_CELL_NAIVE_46
1713.9
B_CELL_NAIVE_47
1712.0
B_CELL_NAIVE_48
1711.6
B_CELL_NAIVE_49
1710.5
B_CELL_NAIVE_50
1709.7
B_CELL_NAIVE_51
1703.2
B_CELL_NAIVE_52
1701.5
B_CELL_NAIVE_53
1695.6
B_CELL_NAIVE_54
1681.0
B_CELL_NAIVE_55
1674.2
B_CELL_NAIVE_56
1674.0
B_CELL_NAIVE_57
1672.9
B_CELL_NAIVE_58
1669.3
B_CELL_NAIVE_59
1663.5
B_CELL_NAIVE_60
1640.1
B_CELL_NAIVE_61
1638.6
B_CELL_NAIVE_62
1637.3
B_CELL_NAIVE_63
1636.5
B_CELL_NAIVE_64
1630.9
B_CELL_NAIVE_65
1608.9
B_CELL_NAIVE_66
1603.8
B_CELL_NAIVE_67
1594.5
B_CELL_NAIVE_68
1592.8
B_CELL_NAIVE_69
1589.6
B_CELL_NAIVE_70
1586.3
B_CELL_NAIVE_71
1584.1
B_CELL_NAIVE_72
1577.0
B_CELL_NAIVE_73
1562.0
B_CELL_NAIVE_74
1551.4
B_CELL_NAIVE_75
1543.3
B_CELL_NAIVE_76
1538.3
B_CELL_NAIVE_77
1519.7
B_CELL_NAIVE_78
1510.2
B_CELL_NAIVE_79
1508.6
B_CELL_NAIVE_80
1499.0
B_CELL_NAIVE_81
1470.9
B_CELL_NAIVE_82
1464.1
B_CELL_NAIVE_83
1442.5
B_CELL_NAIVE_84
1427.3
B_CELL_NAIVE_85
1400.5
B_CELL_NAIVE_86
1393.8
B_CELL_NAIVE_87
1387.7
B_CELL_NAIVE_88
1383.6
B_CELL_NAIVE_89
1374.4
B_CELL_NAIVE_90
1308.3
B_CELL_NAIVE_91
1269.0
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