A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1294.2
nTPM
Monaco:
359.7
nTPM
Schmiedel:
1120.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1294.2
HPA sample
nTPM
NK-cell nTPM: 1294.1
Samples: 6
Max nTPM: 2103.2
Min nTPM: 724.2
P10809_1013
871.1
P10809_1033
1066.7
P10809_1052
1467.6
P10809_1071
2103.2
P10809_1093
724.2
P10809_1103
1532.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
359.7
Monaco sample
nTPM
NK-cell nTPM: 359.7
Samples: 4
Max nTPM: 498.8
Min nTPM: 231.9
RHH5316_R3683
498.8
RHH5224_R3596
256.9
RHH5253_R3625
231.9
RHH5282_R3654
451.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1120.2
Schmiedel sample id
TPM
NK-cell TPM: 1120.2
Samples: 90
Max TPM: 2184.5
Min TPM: 675.3
NK_1
2184.5
NK_2
1939.8
NK_3
1690.8
NK_4
1684.8
NK_5
1651.5
NK_6
1651.3
NK_7
1607.4
NK_8
1570.9
NK_9
1561.8
NK_10
1537.5
NK_11
1477.8
NK_12
1445.4
NK_13
1440.9
NK_14
1432.4
NK_15
1429.5
NK_16
1417.1
NK_17
1388.0
NK_18
1362.5
NK_19
1356.3
NK_20
1355.0
NK_21
1338.1
NK_22
1329.6
NK_23
1309.1
NK_24
1307.2
NK_25
1268.4
NK_26
1258.0
NK_27
1257.5
NK_28
1248.9
NK_29
1234.9
NK_30
1225.6
NK_31
1167.2
NK_32
1165.6
NK_33
1165.1
NK_34
1117.5
NK_35
1113.7
NK_36
1112.7
NK_37
1096.2
NK_38
1081.7
NK_39
1078.0
NK_40
1077.8
NK_41
1074.0
NK_42
1066.2
NK_43
1051.4
NK_44
1033.7
NK_45
1030.4
NK_46
1028.4
NK_47
1027.4
NK_48
1016.7
NK_49
1012.6
NK_50
1006.8
NK_51
994.0
NK_52
993.2
NK_53
993.0
NK_54
992.4
NK_55
992.0
NK_56
984.5
NK_57
978.3
NK_58
976.4
NK_59
968.5
NK_60
943.5
NK_61
935.6
NK_62
933.6
NK_63
930.1
NK_64
926.6
NK_65
920.2
NK_66
913.2
NK_67
905.3
NK_68
902.1
NK_69
894.2
NK_70
892.8
NK_71
892.0
NK_72
890.8
NK_73
880.7
NK_74
879.7
NK_75
875.1
NK_76
866.6
NK_77
866.3
NK_78
863.0
NK_79
859.4
NK_80
833.7
NK_81
814.2
NK_82
795.0
NK_83
793.3
NK_84
789.9
NK_85
785.3
NK_86
779.1
NK_87
777.7
NK_88
759.2
NK_89
688.5
NK_90
675.3
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