A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
854.2
nTPM
Monaco:
524.3
nTPM
Schmiedel:
1007.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
854.2
HPA sample
nTPM
Classical monocyte nTPM: 854.2
Samples: 6
Max nTPM: 1151.9
Min nTPM: 528.5
P10809_1003
1151.9
P10809_1020
556.2
P10809_1039
1058.0
P10809_1058
892.2
P10809_1080
528.5
P10809_1107
938.3
Intermediate monocyte nTPM: 760.8
Samples: 6
Max nTPM: 1194.0
Min nTPM: 493.3
P10809_1004
493.3
P10809_1023
772.1
P10809_1042
908.8
P10809_1061
683.5
P10809_1081
512.9
P10809_1108
1194.0
Non-classical monocyte nTPM: 728.0
Samples: 5
Max nTPM: 1032.3
Min nTPM: 539.5
P10809_1005
606.3
P10809_1053
799.2
P10809_1072
662.5
P10809_1082
539.5
P10809_1109
1032.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
524.3
Monaco sample
nTPM
Classical monocyte nTPM: 471.5
Samples: 4
Max nTPM: 619.5
Min nTPM: 250.7
RHH5313_R3680
466.5
RHH5221_R3593
250.7
RHH5250_R3622
549.4
RHH5279_R3651
619.5
Intermediate monocyte nTPM: 524.4
Samples: 4
Max nTPM: 755.2
Min nTPM: 287.1
RHH5314_R3681
755.2
RHH5222_R3594
287.1
RHH5251_R3623
401.1
RHH5280_R3652
654.0
Non-classical monocyte nTPM: 377.4
Samples: 4
Max nTPM: 513.7
Min nTPM: 203.7
RHH5315_R3682
497.9
RHH5223_R3595
203.7
RHH5252_R3624
294.3
RHH5281_R3653
513.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1007.4
Schmiedel sample id
TPM
Classical monocyte TPM: 959.8
Samples: 91
Max TPM: 1403.7
Min TPM: 719.2
MONOCYTES_1
1403.7
MONOCYTES_2
1294.8
MONOCYTES_3
1268.5
MONOCYTES_4
1240.3
MONOCYTES_5
1231.7
MONOCYTES_6
1206.6
MONOCYTES_7
1205.4
MONOCYTES_8
1191.7
MONOCYTES_9
1176.2
MONOCYTES_10
1173.1
MONOCYTES_11
1156.4
MONOCYTES_12
1155.4
MONOCYTES_13
1123.2
MONOCYTES_14
1113.2
MONOCYTES_15
1110.0
MONOCYTES_16
1108.2
MONOCYTES_17
1105.9
MONOCYTES_18
1101.4
MONOCYTES_19
1092.2
MONOCYTES_20
1081.0
MONOCYTES_21
1067.4
MONOCYTES_22
1051.8
MONOCYTES_23
1039.3
MONOCYTES_24
1029.1
MONOCYTES_25
1027.8
MONOCYTES_26
1020.4
MONOCYTES_27
1015.5
MONOCYTES_28
1010.8
MONOCYTES_29
1009.1
MONOCYTES_30
1005.1
MONOCYTES_31
1001.4
MONOCYTES_32
999.0
MONOCYTES_33
989.6
MONOCYTES_34
989.1
MONOCYTES_35
983.9
MONOCYTES_36
977.4
MONOCYTES_37
976.7
MONOCYTES_38
965.8
MONOCYTES_39
955.4
MONOCYTES_40
951.6
MONOCYTES_41
937.9
MONOCYTES_42
935.6
MONOCYTES_43
932.3
MONOCYTES_44
929.7
MONOCYTES_45
929.6
MONOCYTES_46
922.1
MONOCYTES_47
919.7
MONOCYTES_48
914.5
MONOCYTES_49
912.3
MONOCYTES_50
910.4
MONOCYTES_51
909.8
MONOCYTES_52
903.8
MONOCYTES_53
901.3
MONOCYTES_54
897.0
MONOCYTES_55
896.1
MONOCYTES_56
888.8
MONOCYTES_57
887.1
MONOCYTES_58
883.7
MONOCYTES_59
878.7
MONOCYTES_60
875.9
MONOCYTES_61
875.9
MONOCYTES_62
873.3
MONOCYTES_63
868.7
MONOCYTES_64
868.5
MONOCYTES_65
866.5
MONOCYTES_66
865.6
MONOCYTES_67
858.6
MONOCYTES_68
852.4
MONOCYTES_69
850.5
MONOCYTES_70
849.8
MONOCYTES_71
848.3
MONOCYTES_72
846.9
MONOCYTES_73
845.8
MONOCYTES_74
842.2
MONOCYTES_75
841.8
MONOCYTES_76
841.1
MONOCYTES_77
840.5
MONOCYTES_78
839.9
MONOCYTES_79
827.3
MONOCYTES_80
825.7
MONOCYTES_81
824.7
MONOCYTES_82
818.3
MONOCYTES_83
811.3
MONOCYTES_84
811.1
MONOCYTES_85
788.2
MONOCYTES_86
780.4
MONOCYTES_87
764.2
MONOCYTES_88
749.0
MONOCYTES_89
736.2
MONOCYTES_90
734.6
MONOCYTES_91
719.2
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Non-classical monocyte TPM: 1007.4
Samples: 90
Max TPM: 1468.5
Min TPM: 690.1
M2_1
1468.5
M2_2
1336.4
M2_3
1334.9
M2_4
1293.8
M2_5
1291.2
M2_6
1284.6
M2_7
1282.9
M2_8
1279.2
M2_9
1268.3
M2_10
1266.5
M2_11
1257.1
M2_12
1229.5
M2_13
1225.7
M2_14
1214.3
M2_15
1203.3
M2_16
1202.5
M2_17
1184.6
M2_18
1170.6
M2_19
1169.3
M2_20
1155.7
M2_21
1149.8
M2_22
1148.4
M2_23
1125.9
M2_24
1117.2
M2_25
1109.5
M2_26
1109.4
M2_27
1104.7
M2_28
1093.2
M2_29
1073.6
M2_30
1060.0
M2_31
1059.1
M2_32
1055.7
M2_33
1040.2
M2_34
1037.2
M2_35
1036.4
M2_36
1033.4
M2_37
1015.4
M2_38
1003.8
M2_39
1001.4
M2_40
1000.1
M2_41
994.9
M2_42
983.6
M2_43
983.1
M2_44
982.2
M2_45
980.6
M2_46
979.1
M2_47
977.0
M2_48
976.9
M2_49
967.9
M2_50
957.2
M2_51
945.6
M2_52
945.0
M2_53
940.5
M2_54
937.8
M2_55
937.0
M2_56
928.3
M2_57
925.5
M2_58
920.1
M2_59
916.6
M2_60
910.9
M2_61
901.1
M2_62
896.7
M2_63
894.3
M2_64
894.3
M2_65
883.6
M2_66
882.1
M2_67
882.0
M2_68
878.9
M2_69
862.0
M2_70
858.4
M2_71
856.2
M2_72
855.5
M2_73
855.2
M2_74
853.3
M2_75
851.8
M2_76
847.9
M2_77
847.3
M2_78
836.8
M2_79
836.7
M2_80
821.4
M2_81
816.8
M2_82
812.1
M2_83
800.9
M2_84
800.8
M2_85
796.1
M2_86
786.9
M2_87
786.1
M2_88
750.6
M2_89
750.4
M2_90
690.1
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