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  • RPS4X
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:554.5 nTPM
HPA Brain:143.4 nTPM
GTEx:554.5 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:268.5 nTPM
Mouse:676.5 nTPM
Allen mouse:10.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.4
Sample id Sample description nTPM
Amygdala
nTPM: 143.4
2695 Female, age 67, right hemisphere 181.4
2514 Male, age 75, right hemisphere 152.4
1987 Female, age 91, left hemisphere 135.1
2814 Male, age 76, right hemisphere 124.6
2517 Female, age 94, left hemisphere 123.4
Basal amygdala
nTPM: 120.6
2827 Female, age 67, right hemisphere 164.2
2110 Male, age 80, left hemisphere 127.2
2609 Male, age 75, right hemisphere 123.3
2685 Female, age 94, left hemisphere 109.1
1955 Male, age 76, both hemispheres 101.2
2243 Female, age 91, right hemisphere 98.9
Central amygdala
nTPM: 132.1
2826 Female, age 94, left hemisphere 208.5
2515 Male, age 75, right hemisphere 129.9
2239 Male, age 80, left hemisphere 112.7
2701 Female, age 91, right hemisphere 105.1
1905 Male, age 76, both hemispheres 104.1
Corticomedial amygdala
nTPM: 119.4
2428 Male, age 75, right hemisphere 129.6
2240 Male, age 76, both hemispheres 123.8
2535 Female, age 67, right hemisphere 122.8
2829 Male, age 80, left hemisphere 118.8
2242 Female, age 91, right hemisphere 112.3
2429 Female, age 94, left hemisphere 108.9
Lateral amygdala
nTPM: 137.1
2830 Female, age 67, right hemisphere 209.8
2516 Male, age 75, right hemisphere 158.0
2534 Female, age 94, left hemisphere 143.2
2256 Male, age 80, left hemisphere 114.1
1883 Male, age 76, both hemispheres 103.5
2255 Female, age 91, right hemisphere 94.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

554.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 554.5
Samples: 181

Max nTPM: 1401.2
Min nTPM: 261.6
Std nTPM: 171.5
Median nTPM: 528.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1401.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1240.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1154.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1145.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1047.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 978.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 964.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 919.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 871.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 859.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 845.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 786.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 770.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 763.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 761.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 750.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 743.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 740.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 732.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 728.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 728.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 727.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 721.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 720.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 711.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 702.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 701.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 689.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 676.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 675.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 665.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 663.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 661.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 657.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 657.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 656.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 656.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 655.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 650.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 650.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 648.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 647.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 646.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 641.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 630.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 619.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 619.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 617.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 615.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 610.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 607.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 606.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 599.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 599.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 598.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 598.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 595.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 593.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 592.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 588.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 579.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 576.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 575.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 573.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 572.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 572.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 570.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 570.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 569.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 568.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 566.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 565.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 564.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 559.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 554.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 554.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 548.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 548.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 546.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 546.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 545.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 543.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 541.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 540.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 538.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 538.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 537.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 533.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 532.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 530.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 528.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 524.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 523.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 518.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 513.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 512.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 512.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 511.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 509.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 509.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 509.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 509.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 508.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 505.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 505.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 505.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 503.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 495.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 486.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 486.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 484.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 484.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 481.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 473.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 473.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 473.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 471.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 471.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 471.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 470.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 468.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 465.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 464.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 463.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 459.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 457.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 455.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 451.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 451.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 449.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 448.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 448.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 448.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 448.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 446.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 445.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 445.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 444.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 437.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 436.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 435.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 435.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 432.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 432.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 430.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 429.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 425.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 424.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 419.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 418.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 418.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 414.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 408.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 408.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 408.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 406.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 402.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 400.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 400.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 398.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 398.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 395.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 394.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 393.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 392.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 379.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 373.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 362.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 354.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 353.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 351.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 349.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 342.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 340.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 325.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 316.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 313.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 301.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 289.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 273.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 261.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 31.5
FF:10151-102I7 76 years, female 31.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.5
Pig sample Sample description nTPM
Amygdala
nTPM: 268.5
Samples: 4

Max nTPM: 327.5
Min nTPM: 207.7
Sample A Female 327.5
Sample B Female 288.8
Sample C Male 250.0
Sample D Male 207.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

676.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 676.5
Samples: 4

Max nTPM: 726.7
Min nTPM: 631.4
Sample A Male 631.4
Sample B Male 664.9
Sample C Female 726.7
Sample D Female 683.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.9
69873295 Antisense, RP_050510_04_H12, Mouse strain C57BL/6J (56 days, male) 10.9

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