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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1245.9 nTPM
GTEx:1245.9 nTPM
FANTOM5:45.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA000857
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1245.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1245.9
Samples: 170

Max nTPM: 3219.3
Min nTPM: 634.2
Std nTPM: 330.5
Median nTPM: 1192.0
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3219.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2752.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2389.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2184.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1905.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1901.6
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 1775.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1767.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1758.0
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1691.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1681.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1679.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1678.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1638.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1614.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1607.1
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1605.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1602.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1561.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1548.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1545.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1519.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1514.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1509.0
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1505.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1504.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1502.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1498.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1478.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1478.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1471.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1466.8
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1449.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1445.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1441.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1441.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1415.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1414.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1406.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1401.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1393.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1393.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1385.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1380.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1379.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1375.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1373.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1372.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1372.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1365.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1363.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1363.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1360.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1345.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1339.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1328.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1318.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1311.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1309.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1309.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1309.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1302.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1297.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1296.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1285.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1275.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1268.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1266.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1262.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1252.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1246.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1245.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1241.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1240.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1238.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1233.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1230.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1230.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1229.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1227.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1218.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1211.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1197.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1193.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1193.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1191.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1189.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1180.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1180.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1177.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1176.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1172.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1168.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1160.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1156.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1155.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1150.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1149.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1147.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1141.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1140.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1139.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1138.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1134.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1128.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1127.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1124.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1119.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1116.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 1112.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1112.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1095.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1091.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1087.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1083.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1065.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1064.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1062.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1053.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1052.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1044.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1041.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1038.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1037.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1029.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1014.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1012.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1011.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1011.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1010.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1009.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1008.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1003.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1002.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1002.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 994.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 992.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 987.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 980.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 978.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 966.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 959.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 959.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 956.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 956.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 946.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 942.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 941.5
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 939.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 937.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 934.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 931.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 926.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 921.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 912.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 910.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 901.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 890.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 886.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 875.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 871.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 870.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 863.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 861.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 847.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 839.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 818.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 804.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 718.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 634.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 45.2
FF:10204-103F6 68 years, female 45.2

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