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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:701.7 nTPM
HPA:365.6 nTPM
GTEx:701.7 nTPM
FANTOM5:85.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA000857
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

365.6
overview
Male, age 65
Small intestine sample 232
nTPM: 419.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 316.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 420.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 305.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

701.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 701.7
Samples: 207

Max nTPM: 1511.6
Min nTPM: 295.6
Std nTPM: 214.1
Median nTPM: 656.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1511.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1244.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1228.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1205.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1193.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1187.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1177.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1170.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1159.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1156.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1154.7
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1125.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1092.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1086.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1084.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1050.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1039.9
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1036.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1023.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1008.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 994.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 994.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 992.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 978.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 973.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 968.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 967.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 961.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 958.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 949.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 940.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 936.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 934.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 930.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 923.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 914.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 911.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 910.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 888.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 886.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 886.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 882.7
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 875.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 869.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 866.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 866.2
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 862.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 856.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 856.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 854.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 838.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 832.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 825.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 819.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 819.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 818.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 815.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 813.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 811.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 807.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 805.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 785.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 783.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 773.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 771.6
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 771.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 766.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 761.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 758.2
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 756.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 752.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 750.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 750.2
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 744.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 732.7
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 732.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 728.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 727.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 727.7
GTEX-1192X-2526-SM-59868 50-59 years, male 724.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 721.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 719.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 713.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 707.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 704.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 701.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 699.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 697.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 696.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 696.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 694.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 694.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 686.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 682.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 678.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 678.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 676.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 674.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 669.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 668.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 658.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 658.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 656.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 656.1
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 653.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 653.1
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 651.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 648.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 647.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 645.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 644.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 644.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 640.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 640.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 638.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 633.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 631.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 630.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 629.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 623.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 620.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 620.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 617.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 611.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 609.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 604.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 604.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 601.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 599.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 598.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 597.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 590.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 589.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 588.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 584.8
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 581.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 581.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 579.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 577.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 576.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 574.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 573.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 572.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 571.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 567.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 566.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 564.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 562.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 561.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 557.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 553.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 552.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 549.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 545.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 543.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 540.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 537.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 533.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 533.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 533.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 530.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 525.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 513.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 513.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 511.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 510.7
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 510.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 509.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 507.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 506.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 505.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 505.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 502.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 500.8
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 494.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 492.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 486.1
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 485.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 484.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 483.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 482.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 482.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 481.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 481.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 480.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 478.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 472.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 469.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 468.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 460.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 456.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 445.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 445.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 436.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 414.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 414.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 404.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 402.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 400.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 400.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 392.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 387.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 386.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 382.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 373.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 369.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 295.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 85.3
FF:10024-101D6 15,40,85 years, mixed 85.3

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