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RPS4X
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  • TISSUE

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  • RPS4X
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:389.2 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:243.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA000857
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

389.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 389.2
Samples: 300

Max nTPM: 927.3
Min nTPM: 201.9
Std nTPM: 105.2
Median nTPM: 374.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 927.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 840.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 729.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 719.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 703.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 680.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 677.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 666.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 659.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 637.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 622.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 618.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 601.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 595.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 593.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 585.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 581.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 579.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 577.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 571.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 570.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 562.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 561.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 553.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 553.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 533.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 532.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 529.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 524.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 519.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 519.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 514.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 513.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 510.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 495.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 495.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 490.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 487.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 485.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 485.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 483.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 481.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 480.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 475.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 474.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 474.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 473.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 472.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 469.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 469.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 468.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 468.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 457.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 456.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 455.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 455.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 454.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 453.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 452.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 450.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 448.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 448.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 448.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 447.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 447.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 447.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 447.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 446.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 444.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 443.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 442.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 442.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 441.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 440.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 439.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 438.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 438.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 437.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 436.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 436.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 434.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 434.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 433.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 431.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 429.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 426.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 424.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 423.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 421.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 421.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 419.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 418.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 416.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 416.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 415.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 415.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 413.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 413.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 413.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 413.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 413.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 412.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 412.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 408.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 408.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 407.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 406.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 406.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 404.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 404.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 404.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 402.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 402.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 401.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 400.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 399.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 399.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 398.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 398.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 398.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 398.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 396.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 394.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 393.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 392.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 392.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 391.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 390.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 390.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 389.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 388.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 386.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 386.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 383.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 383.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 383.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 382.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 381.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 380.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 379.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 379.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 378.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 378.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 377.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 377.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 376.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 376.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 375.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 375.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 375.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 374.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 374.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 374.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 374.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 374.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 371.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 371.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 371.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 369.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 369.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 368.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 368.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 367.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 367.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 364.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 364.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 363.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 363.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 363.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 361.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 360.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 359.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 359.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 356.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 355.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 354.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 354.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 353.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 352.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 352.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 351.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 350.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 349.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 349.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 349.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 348.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 348.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 347.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 346.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 345.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 344.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 344.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 344.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 344.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 343.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 342.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 342.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 341.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 341.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 340.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 339.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 337.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 337.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 336.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 333.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 332.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 331.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 331.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 329.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 328.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 328.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 326.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 326.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 324.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 323.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 320.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 319.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 319.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 319.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 319.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 318.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 318.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 317.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 317.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 316.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 315.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 314.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 313.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 313.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 311.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 311.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 309.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 308.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 307.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 305.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 304.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 303.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 302.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 301.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 301.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 301.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 301.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 300.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 298.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 298.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 297.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 296.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 296.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 294.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 294.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 294.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 293.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 292.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 291.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 291.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 291.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 290.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 285.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 284.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 284.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 282.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 282.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 281.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 280.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 280.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 279.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 279.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 279.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 276.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 276.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 276.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 274.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 273.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 272.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 272.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 271.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 271.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 270.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 268.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 268.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 267.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 266.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 265.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 263.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 260.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 258.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 257.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 252.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 251.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 249.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 247.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 245.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 238.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 234.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 234.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 223.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 221.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 209.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 208.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 201.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.9
FF:10164-103B2 76 years, female 45.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.1
Pig sample Sample description nTPM
Caudate
nTPM: 243.1
Samples: 4

Max nTPM: 271.1
Min nTPM: 209.3
Sample A Female 250.2
Sample B Female 241.9
Sample C Male 271.1
Sample D Male 209.3

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