HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:156.2 nTPM
HPA Brain:193.2 nTPM
GTEx:156.2 nTPM
FANTOM5:126.5 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:30.7 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 193.2
Sample id Sample description nTPM
Hippocampus
nTPM: 132.1
2529 Female, age 94, left hemisphere 170.6
1911 Female, age 85, right hemisphere 153.1
2621 Female, age 67, right hemisphere 140.0
1898 Male, age 80, left hemisphere 119.9
2148 Female, age 91, left hemisphere 111.4
1855 Male, age 76, left hemisphere 97.7
Dentate gyrus
nTPM: 131.1
2530 Female, age 94, left hemisphere 230.7
2531 Female, age 67, both hemispheres 140.5
2010 Male, age 76, both hemispheres 137.8
2246 Female, age 85, both hemispheres 111.2
2528 Male, age 74, both hemispheres 88.4
1927 Female, age 91, both hemispheres 78.0
Entorhinal gyrus
nTPM: 168.7
2117 Female, age 91, right hemisphere 255.0
2686 Male, age 75, right hemisphere 233.1
2764 Male, age 80, right hemisphere 175.4
2613 Female, age 94, left hemisphere 143.4
1938 Female, age 85, left hemisphere 123.0
1787 Male, age 76, left hemisphere 82.2
Hippocampus, CA1
nTPM: 89.9
2082 Female, age 91, right hemisphere 108.2
2527 Male, age 74, both hemispheres 107.5
1873 Female, age 85, both hemispheres 100.1
2749 Male, age 80, left hemisphere 88.5
2045 Male, age 76, both hemispheres 45.2
Hippocampus, CA2
nTPM: 133.5
1963 Male, age 80, left hemisphere 236.0
2437 Female, age 94, left hemisphere 153.3
2113 Female, age 91, right hemisphere 127.6
1940 Female, age 85, left hemisphere 123.0
2249 Male, age 74, both hemispheres 103.6
1892 Male, age 76, both hemispheres 57.4
Hippocampus, CA3
nTPM: 97.4
1891 Female, age 85, both hemispheres 200.4
1867 Male, age 76, both hemispheres 107.5
2861 Female, age 67, both hemispheres 98.9
2436 Male, age 74, both hemispheres 66.9
2137 Male, age 80, left hemisphere 61.6
2620 Female, age 94, left hemisphere 49.2
Parahippocampal cortex
nTPM: 126.5
2532 Female, age 72, left hemisphere 194.4
2692 Male, age 74, both hemispheres 189.1
1990 Female, age 91, right hemisphere 157.4
2245 Female, age 91, both hemispheres 125.4
2622 Female, age 67, right hemisphere 124.8
1850 Male, age 80, both hemispheres 120.5
2018 Male, age 76, both hemispheres 111.9
1933 Female, age 85, both hemispheres 105.5
2693 Female, age 94, both hemispheres 75.8
2250 Female, age 67, right hemisphere 60.7
Perirhinal gyrus
nTPM: 67.7
1847 Female, age 91, left hemisphere 77.3
1794 Male, age 80, right hemisphere 68.5
2848 Male, age 76, right hemisphere 65.7
2521 Female, age 94, right hemisphere 64.4
1841 Female, age 85, right hemisphere 62.5
Subiculum
nTPM: 193.2
2438 Female, age 94, left hemisphere 276.4
2042 Male, age 76, both hemispheres 235.5
1901 Male, age 80, both hemispheres 223.2
1977 Female, age 85, both hemispheres 184.2
2619 Male, age 74, both hemispheres 122.5
2729 Female, age 91, right hemisphere 117.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 156.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 156.2
Samples: 255

Max nTPM: 634.6
Min nTPM: 17.2
Std nTPM: 102.9
Median nTPM: 125.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 634.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 589.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 559.3
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 543.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 512.2
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 447.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 441.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 419.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 400.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 397.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 381.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 126.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 126.5
FF:10153-102I9 76 years, female 181.4
FF:10169-103B7 60 years, female 71.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.8
Pig sample Sample description nTPM
Subiculum
nTPM: 24.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.9
Sample A Female 24.8
Sample B Female 24.4
Sample C Male 19.9
Sample D Male 27.2
Dorsal hippocampus
nTPM: 38.9
Samples: 4

Max nTPM: 56.1
Min nTPM: 20.5
Sample A Female 56.1
Sample B Female 26.2
Sample C Male 52.6
Sample D Male 20.5
Entorhinal cortex
nTPM: 16.5
Samples: 4

Max nTPM: 17.3
Min nTPM: 15.2
Sample A Female 15.2
Sample B Female 16.8
Sample C Male 17.3
Sample D Male 16.6
Ventral hippocampus
nTPM: 27.8
Samples: 4

Max nTPM: 38.6
Min nTPM: 17.8
Sample A Female 30.4
Sample B Female 17.8
Sample C Male 24.2
Sample D Male 38.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 30.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 18.1
Sample A Male 22.9
Sample B Male 19.8
Sample C Female 23.5
Sample D Female 18.1
Hippocampal formation
nTPM: 30.7
Samples: 4

Max nTPM: 44.9
Min nTPM: 24.0
Sample A Male 24.0
Sample B Male 24.5
Sample C Female 44.9
Sample D Female 29.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 0.9
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.6

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