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  • LPAR1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:154.8 nTPM
HPA Brain:297.1 nTPM
GTEx:154.8 nTPM
FANTOM5:151.3 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:15.5 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

297.1
Sample id Sample description nTPM
Amygdala
nTPM: 172.6
2695 Female, age 67, right hemisphere 254.5
2814 Male, age 76, right hemisphere 190.0
2517 Female, age 94, left hemisphere 175.3
2514 Male, age 75, right hemisphere 147.6
1987 Female, age 91, left hemisphere 95.7
Basal amygdala
nTPM: 213.8
2827 Female, age 67, right hemisphere 490.6
2685 Female, age 94, left hemisphere 230.1
2609 Male, age 75, right hemisphere 181.0
2110 Male, age 80, left hemisphere 177.6
1955 Male, age 76, both hemispheres 117.2
2243 Female, age 91, right hemisphere 86.1
Central amygdala
nTPM: 247.9
2826 Female, age 94, left hemisphere 626.1
2515 Male, age 75, right hemisphere 168.1
2239 Male, age 80, left hemisphere 155.7
2701 Female, age 91, right hemisphere 149.2
1905 Male, age 76, both hemispheres 140.6
Corticomedial amygdala
nTPM: 126.5
2535 Female, age 67, right hemisphere 263.7
2428 Male, age 75, right hemisphere 137.8
2429 Female, age 94, left hemisphere 117.9
2240 Male, age 76, both hemispheres 100.6
2829 Male, age 80, left hemisphere 100.3
2242 Female, age 91, right hemisphere 38.6
Lateral amygdala
nTPM: 297.1
2830 Female, age 67, right hemisphere 621.0
2534 Female, age 94, left hemisphere 339.6
2516 Male, age 75, right hemisphere 296.4
2256 Male, age 80, left hemisphere 231.7
1883 Male, age 76, both hemispheres 150.6
2255 Female, age 91, right hemisphere 143.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 154.8
Samples: 181

Max nTPM: 653.9
Min nTPM: 7.3
Std nTPM: 110.1
Median nTPM: 120.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 653.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 565.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 477.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 443.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 425.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 415.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 409.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 409.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 393.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 381.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 371.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 368.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 359.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 357.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 352.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 346.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 343.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 300.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 299.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 292.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 285.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 282.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 279.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 273.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 272.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 267.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 266.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 262.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 253.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 252.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 245.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 240.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 237.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 235.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 235.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 232.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 226.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 218.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 218.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 215.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 213.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 204.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 204.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 201.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 199.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 199.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 193.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 192.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 192.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 189.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 186.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 185.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 185.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 184.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 177.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 177.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 177.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 177.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 167.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 164.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 164.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 163.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 163.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 163.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 161.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 160.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 159.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 159.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 159.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 153.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 153.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 151.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 147.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 147.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 147.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 138.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 136.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 129.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 128.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 126.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 126.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 125.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 124.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 120.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 119.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 119.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 117.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 116.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 114.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 113.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 109.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 105.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 102.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 100.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 98.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 98.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 97.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 92.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 89.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 89.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 88.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 88.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 86.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 86.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 83.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 82.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 81.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 80.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 77.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 76.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 74.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 74.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 73.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 73.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 73.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 72.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 71.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 71.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 71.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 71.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 70.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 69.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 69.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 68.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 68.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 66.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 66.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 65.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 64.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 61.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 61.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 60.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 59.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 59.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 59.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 59.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 57.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 56.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 56.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 53.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 53.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 52.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 50.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 50.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 48.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 48.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 43.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 43.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 43.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 42.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 40.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 38.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 38.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 34.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 26.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 7.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.3
FF:10151-102I7 76 years, female 151.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.1
Pig sample Sample description nTPM
Amygdala
nTPM: 24.1
Samples: 4

Max nTPM: 31.7
Min nTPM: 17.7
Sample A Female 21.2
Sample B Female 31.7
Sample C Male 25.6
Sample D Male 17.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 15.6
Samples: 4

Max nTPM: 21.4
Min nTPM: 12.3
Sample A Male 15.3
Sample B Male 12.3
Sample C Female 21.4
Sample D Female 13.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 0.7
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.6
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.5

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