We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LPAR1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • LPAR1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:220.4 nTPM
HPA Brain:246.7 nTPM
GTEx:220.4 nTPM
FANTOM5:270.1 Scaled Tags Per Million
Pig:119.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 171.9
2565 Male, age 75, midline 204.2
1981 Female, age 72, midline 171.0
2048 Male, age 55, midline 168.5
2816 Male, age 47, midline 159.4
2194 Female, age 79, both hemispheres 156.4
Cervical spinal cord, dorsal horn
nTPM: 176.9
2173 Female, age 72, unknown 235.2
2296 Male, age 66, both hemispheres 235.0
2069 Male, age 47, both hemispheres 182.7
1877 Male, age 55, unknown 163.0
2297 Male, age 75, both hemispheres 126.8
2721 Male, age 90, both hemispheres 118.9
Cervical spinal cord, ventral horn
nTPM: 246.7
2480 Male, age 75, both hemispheres 373.8
2809 Male, age 90, both hemispheres 310.0
2295 Male, age 66, both hemispheres 258.3
2068 Male, age 55, unknown 194.3
2820 Female, age 79, both hemispheres 176.8
2098 Female, age 72, unknown 166.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 220.4
Samples: 204

Max nTPM: 756.4
Min nTPM: 51.8
Std nTPM: 98.5
Median nTPM: 200.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 756.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 592.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 581.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 546.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 528.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 444.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 443.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 424.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 419.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 413.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 389.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 376.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 372.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 357.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 355.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 351.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 350.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 343.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 336.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 334.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 330.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 330.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 325.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 324.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 323.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 323.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 322.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 319.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 319.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 318.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 317.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 310.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 307.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 307.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 300.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 297.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 295.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 293.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 292.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 292.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 290.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 286.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 284.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 281.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 278.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 274.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 273.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 267.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 266.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 264.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 263.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 263.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 259.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 259.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 259.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 255.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 253.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 250.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 249.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 247.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 243.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 242.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 241.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 238.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 237.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 233.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 232.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 231.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 228.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 227.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 227.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 227.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 226.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 226.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 226.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 225.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 222.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 221.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 221.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 220.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 219.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 218.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 217.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 217.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 214.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 213.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 213.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 211.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 209.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 207.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 206.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 206.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 206.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 206.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 204.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 204.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 203.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 202.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 200.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 200.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 200.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 200.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 199.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 198.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 197.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 195.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 194.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 192.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 192.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 192.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 190.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 189.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 188.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 186.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 185.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 185.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 185.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 184.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 183.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 183.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 182.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 182.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 182.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 181.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 179.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 178.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 178.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 177.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 176.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 176.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 175.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 175.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 175.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 174.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 172.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 172.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 172.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 170.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 169.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 169.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 168.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 167.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 167.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 167.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 164.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 164.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 163.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 160.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 158.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 157.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 154.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 154.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 152.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 152.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 151.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 150.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 150.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 149.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 147.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 144.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 144.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 143.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 142.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 141.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 140.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 138.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 136.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 135.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 135.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 135.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 135.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 134.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 134.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 133.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 132.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 132.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 131.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 127.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 127.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 120.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 119.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 115.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 114.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 113.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 111.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 111.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 111.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 110.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 109.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 108.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 99.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 97.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 84.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 84.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 78.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 78.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 59.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 51.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

270.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 270.1
FF:10159-103A6 76 years, female 274.2
FF:10181-103D1 60 years, female 266.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.3
Samples: 4

Max nTPM: 121.7
Min nTPM: 90.6
Sample A Female 90.6
Sample B Female 106.1
Sample C Male 121.7
Sample D Male 118.9
Ventral spinal cord
nTPM: 119.5
Samples: 4

Max nTPM: 164.9
Min nTPM: 99.4
Sample A Female 113.7
Sample B Female 100.1
Sample C Male 99.4
Sample D Male 164.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo