A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6819.6
nTPM
Monaco:
1699.5
nTPM
Schmiedel:
75.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6819.6
HPA sample
nTPM
Memory B-cell nTPM: 6819.6
Samples: 6
Max nTPM: 8025.5
Min nTPM: 3771.6
P10809_1017
6745.8
P10809_1025
7938.3
P10809_1044
3771.6
P10809_1063
8025.5
P10809_1092
7381.8
P10809_1105
7054.5
Naive B-cell nTPM: 5705.6
Samples: 6
Max nTPM: 6758.0
Min nTPM: 3550.2
P10809_1011
5244.6
P10809_1029
6220.6
P10809_1048
3550.2
P10809_1067
6758.0
P10809_1091
6032.1
P10809_1104
6428.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1699.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1699.6
Samples: 4
Max nTPM: 3588.5
Min nTPM: 377.3
RHH5310_R3677
1366.1
RHH5218_R3590
377.3
RHH5247_R3619
3588.5
RHH5276_R3648
1466.3
Naive B-cell nTPM: 1240.0
Samples: 4
Max nTPM: 1939.3
Min nTPM: 643.3
RHH5308_R3675
1355.6
RHH5216_R3588
643.3
RHH5245_R3617
1939.3
RHH5274_R3646
1021.9
Non-switched memory B-cell nTPM: 1232.4
Samples: 4
Max nTPM: 1672.3
Min nTPM: 620.5
RHH5309_R3676
1588.3
RHH5217_R3589
620.5
RHH5246_R3618
1048.4
RHH5275_R3647
1672.3
Plasmablast nTPM: 976.5
Samples: 4
Max nTPM: 1244.4
Min nTPM: 577.0
RHH5312_R3679
1244.4
RHH5220_R3592
577.0
RHH5249_R3621
1066.0
RHH5278_R3650
1018.4
Switched memory B-cell nTPM: 1055.5
Samples: 4
Max nTPM: 1655.8
Min nTPM: 578.7
RHH5311_R3678
1655.8
RHH5219_R3591
757.0
RHH5248_R3620
578.7
RHH5277_R3649
1230.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.6
Schmiedel sample id
TPM
Naive B-cell TPM: 75.6
Samples: 91
Max TPM: 106.4
Min TPM: 33.2
B_CELL_NAIVE_1
106.4
B_CELL_NAIVE_2
98.7
B_CELL_NAIVE_3
97.8
B_CELL_NAIVE_4
95.9
B_CELL_NAIVE_5
93.7
B_CELL_NAIVE_6
92.2
B_CELL_NAIVE_7
91.7
B_CELL_NAIVE_8
90.9
B_CELL_NAIVE_9
90.6
B_CELL_NAIVE_10
88.6
B_CELL_NAIVE_11
87.3
B_CELL_NAIVE_12
87.3
B_CELL_NAIVE_13
86.7
B_CELL_NAIVE_14
86.2
B_CELL_NAIVE_15
86.1
B_CELL_NAIVE_16
86.0
B_CELL_NAIVE_17
85.8
B_CELL_NAIVE_18
85.5
B_CELL_NAIVE_19
85.5
B_CELL_NAIVE_20
85.0
B_CELL_NAIVE_21
85.0
B_CELL_NAIVE_22
84.0
B_CELL_NAIVE_23
83.6
B_CELL_NAIVE_24
82.9
B_CELL_NAIVE_25
82.5
B_CELL_NAIVE_26
80.7
B_CELL_NAIVE_27
80.5
B_CELL_NAIVE_28
80.2
B_CELL_NAIVE_29
80.1
B_CELL_NAIVE_30
80.0
B_CELL_NAIVE_31
79.1
B_CELL_NAIVE_32
78.6
B_CELL_NAIVE_33
78.6
B_CELL_NAIVE_34
78.2
B_CELL_NAIVE_35
77.7
B_CELL_NAIVE_36
77.6
B_CELL_NAIVE_37
77.1
B_CELL_NAIVE_38
76.9
B_CELL_NAIVE_39
76.9
B_CELL_NAIVE_40
76.7
B_CELL_NAIVE_41
76.4
B_CELL_NAIVE_42
76.3
B_CELL_NAIVE_43
76.1
B_CELL_NAIVE_44
75.8
B_CELL_NAIVE_45
75.7
B_CELL_NAIVE_46
75.5
B_CELL_NAIVE_47
75.5
B_CELL_NAIVE_48
75.4
B_CELL_NAIVE_49
75.4
B_CELL_NAIVE_50
74.9
B_CELL_NAIVE_51
74.5
B_CELL_NAIVE_52
74.5
B_CELL_NAIVE_53
74.1
B_CELL_NAIVE_54
73.9
B_CELL_NAIVE_55
73.0
B_CELL_NAIVE_56
72.6
B_CELL_NAIVE_57
72.6
B_CELL_NAIVE_58
72.2
B_CELL_NAIVE_59
71.7
B_CELL_NAIVE_60
71.6
B_CELL_NAIVE_61
71.3
B_CELL_NAIVE_62
71.2
B_CELL_NAIVE_63
71.1
B_CELL_NAIVE_64
70.6
B_CELL_NAIVE_65
70.5
B_CELL_NAIVE_66
69.5
B_CELL_NAIVE_67
69.5
B_CELL_NAIVE_68
68.5
B_CELL_NAIVE_69
68.0
B_CELL_NAIVE_70
67.9
B_CELL_NAIVE_71
67.8
B_CELL_NAIVE_72
67.3
B_CELL_NAIVE_73
66.7
B_CELL_NAIVE_74
66.7
B_CELL_NAIVE_75
66.5
B_CELL_NAIVE_76
65.4
B_CELL_NAIVE_77
64.4
B_CELL_NAIVE_78
63.9
B_CELL_NAIVE_79
63.9
B_CELL_NAIVE_80
63.8
B_CELL_NAIVE_81
63.6
B_CELL_NAIVE_82
62.9
B_CELL_NAIVE_83
62.7
B_CELL_NAIVE_84
61.2
B_CELL_NAIVE_85
61.2
B_CELL_NAIVE_86
61.1
B_CELL_NAIVE_87
59.2
B_CELL_NAIVE_88
58.9
B_CELL_NAIVE_89
57.2
B_CELL_NAIVE_90
54.8
B_CELL_NAIVE_91
33.2
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