A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2111.8
nTPM
Monaco:
632.9
nTPM
Schmiedel:
37.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2111.8
HPA sample
nTPM
Classical monocyte nTPM: 1937.8
Samples: 6
Max nTPM: 3841.4
Min nTPM: 1141.6
P10809_1003
3841.4
P10809_1020
1845.7
P10809_1039
1141.6
P10809_1058
1632.0
P10809_1080
1340.3
P10809_1107
1825.5
Intermediate monocyte nTPM: 2111.8
Samples: 6
Max nTPM: 2525.8
Min nTPM: 1575.3
P10809_1004
2344.1
P10809_1023
2433.6
P10809_1042
2131.7
P10809_1061
1660.3
P10809_1081
1575.3
P10809_1108
2525.8
Non-classical monocyte nTPM: 1747.3
Samples: 5
Max nTPM: 2175.4
Min nTPM: 1358.5
P10809_1005
2108.4
P10809_1053
1706.8
P10809_1072
1387.3
P10809_1082
1358.5
P10809_1109
2175.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
632.9
Monaco sample
nTPM
Classical monocyte nTPM: 406.3
Samples: 4
Max nTPM: 520.3
Min nTPM: 309.7
RHH5313_R3680
520.3
RHH5221_R3593
366.0
RHH5250_R3622
309.7
RHH5279_R3651
429.3
Intermediate monocyte nTPM: 632.9
Samples: 4
Max nTPM: 808.7
Min nTPM: 426.1
RHH5314_R3681
632.0
RHH5222_R3594
808.7
RHH5251_R3623
665.0
RHH5280_R3652
426.1
Non-classical monocyte nTPM: 465.0
Samples: 4
Max nTPM: 595.1
Min nTPM: 295.2
RHH5315_R3682
595.1
RHH5223_R3595
552.1
RHH5252_R3624
417.6
RHH5281_R3653
295.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.9
Schmiedel sample id
TPM
Classical monocyte TPM: 37.9
Samples: 91
Max TPM: 56.9
Min TPM: 25.2
MONOCYTES_1
56.9
MONOCYTES_2
50.9
MONOCYTES_3
49.2
MONOCYTES_4
47.8
MONOCYTES_5
47.7
MONOCYTES_6
47.5
MONOCYTES_7
46.6
MONOCYTES_8
45.2
MONOCYTES_9
44.8
MONOCYTES_10
44.2
MONOCYTES_11
43.6
MONOCYTES_12
43.3
MONOCYTES_13
43.3
MONOCYTES_14
43.0
MONOCYTES_15
42.5
MONOCYTES_16
42.5
MONOCYTES_17
42.3
MONOCYTES_18
42.3
MONOCYTES_19
41.4
MONOCYTES_20
41.1
MONOCYTES_21
40.9
MONOCYTES_22
40.6
MONOCYTES_23
40.4
MONOCYTES_24
40.3
MONOCYTES_25
40.2
MONOCYTES_26
40.2
MONOCYTES_27
40.1
MONOCYTES_28
40.0
MONOCYTES_29
39.8
MONOCYTES_30
39.6
MONOCYTES_31
39.6
MONOCYTES_32
39.6
MONOCYTES_33
39.4
MONOCYTES_34
39.4
MONOCYTES_35
39.4
MONOCYTES_36
39.0
MONOCYTES_37
38.9
MONOCYTES_38
38.9
MONOCYTES_39
38.8
MONOCYTES_40
38.8
MONOCYTES_41
38.7
MONOCYTES_42
38.5
MONOCYTES_43
38.5
MONOCYTES_44
38.5
MONOCYTES_45
38.4
MONOCYTES_46
38.3
MONOCYTES_47
38.0
MONOCYTES_48
37.9
MONOCYTES_49
37.8
MONOCYTES_50
37.8
MONOCYTES_51
37.7
MONOCYTES_52
37.4
MONOCYTES_53
37.2
MONOCYTES_54
37.2
MONOCYTES_55
36.4
MONOCYTES_56
36.4
MONOCYTES_57
36.2
MONOCYTES_58
36.2
MONOCYTES_59
36.1
MONOCYTES_60
35.7
MONOCYTES_61
35.3
MONOCYTES_62
35.2
MONOCYTES_63
35.0
MONOCYTES_64
34.8
MONOCYTES_65
34.2
MONOCYTES_66
34.1
MONOCYTES_67
34.1
MONOCYTES_68
34.1
MONOCYTES_69
34.0
MONOCYTES_70
33.9
MONOCYTES_71
33.7
MONOCYTES_72
33.1
MONOCYTES_73
32.5
MONOCYTES_74
32.4
MONOCYTES_75
32.4
MONOCYTES_76
32.2
MONOCYTES_77
32.0
MONOCYTES_78
31.8
MONOCYTES_79
31.7
MONOCYTES_80
31.5
MONOCYTES_81
31.4
MONOCYTES_82
31.4
MONOCYTES_83
31.2
MONOCYTES_84
31.0
MONOCYTES_85
30.9
MONOCYTES_86
30.6
MONOCYTES_87
30.4
MONOCYTES_88
30.0
MONOCYTES_89
29.4
MONOCYTES_90
27.2
MONOCYTES_91
25.2
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Non-classical monocyte TPM: 28.1
Samples: 90
Max TPM: 43.4
Min TPM: 21.5
M2_1
43.4
M2_2
38.8
M2_3
35.7
M2_4
35.4
M2_5
34.3
M2_6
34.0
M2_7
33.9
M2_8
33.7
M2_9
33.1
M2_10
33.0
M2_11
32.9
M2_12
32.7
M2_13
31.8
M2_14
31.4
M2_15
31.2
M2_16
31.2
M2_17
31.1
M2_18
30.8
M2_19
30.8
M2_20
30.6
M2_21
30.4
M2_22
30.3
M2_23
30.3
M2_24
30.1
M2_25
30.0
M2_26
30.0
M2_27
29.7
M2_28
29.6
M2_29
29.4
M2_30
29.4
M2_31
29.2
M2_32
29.1
M2_33
29.1
M2_34
29.1
M2_35
29.1
M2_36
28.8
M2_37
28.5
M2_38
28.4
M2_39
28.4
M2_40
28.2
M2_41
28.1
M2_42
27.8
M2_43
27.8
M2_44
27.6
M2_45
27.6
M2_46
27.6
M2_47
27.6
M2_48
27.4
M2_49
27.4
M2_50
27.3
M2_51
27.2
M2_52
26.9
M2_53
26.9
M2_54
26.8
M2_55
26.6
M2_56
26.6
M2_57
26.6
M2_58
26.5
M2_59
26.3
M2_60
26.1
M2_61
26.1
M2_62
25.8
M2_63
25.8
M2_64
25.8
M2_65
25.5
M2_66
25.5
M2_67
25.4
M2_68
25.4
M2_69
25.2
M2_70
25.1
M2_71
25.1
M2_72
24.8
M2_73
24.6
M2_74
24.6
M2_75
24.5
M2_76
24.1
M2_77
24.1
M2_78
23.8
M2_79
23.8
M2_80
23.6
M2_81
23.6
M2_82
23.5
M2_83
23.4
M2_84
23.1
M2_85
23.0
M2_86
23.0
M2_87
23.0
M2_88
22.8
M2_89
22.6
M2_90
21.5
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