A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4170.2
nTPM
Monaco:
504.4
nTPM
Schmiedel:
51.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4170.2
HPA sample
nTPM
NK-cell nTPM: 4170.2
Samples: 6
Max nTPM: 5340.1
Min nTPM: 1653.5
P10809_1013
4278.8
P10809_1033
5340.1
P10809_1052
4574.6
P10809_1071
4563.2
P10809_1093
1653.5
P10809_1103
4611.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
504.4
Monaco sample
nTPM
NK-cell nTPM: 504.4
Samples: 4
Max nTPM: 605.6
Min nTPM: 398.0
RHH5316_R3683
605.6
RHH5224_R3596
398.0
RHH5253_R3625
423.6
RHH5282_R3654
590.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.3
Schmiedel sample id
TPM
NK-cell TPM: 51.3
Samples: 90
Max TPM: 75.5
Min TPM: 29.3
NK_1
75.5
NK_2
74.8
NK_3
72.6
NK_4
69.9
NK_5
69.8
NK_6
68.4
NK_7
67.1
NK_8
66.5
NK_9
66.3
NK_10
66.2
NK_11
65.9
NK_12
64.4
NK_13
63.2
NK_14
62.9
NK_15
62.4
NK_16
62.2
NK_17
61.6
NK_18
61.2
NK_19
60.9
NK_20
60.7
NK_21
59.5
NK_22
59.4
NK_23
59.2
NK_24
58.4
NK_25
58.4
NK_26
58.0
NK_27
57.4
NK_28
56.4
NK_29
55.7
NK_30
55.5
NK_31
55.0
NK_32
55.0
NK_33
54.3
NK_34
54.1
NK_35
53.5
NK_36
53.1
NK_37
53.0
NK_38
52.3
NK_39
52.0
NK_40
51.9
NK_41
51.7
NK_42
51.6
NK_43
51.5
NK_44
51.2
NK_45
51.2
NK_46
51.1
NK_47
51.0
NK_48
50.5
NK_49
50.1
NK_50
50.1
NK_51
49.9
NK_52
49.7
NK_53
49.0
NK_54
48.9
NK_55
48.8
NK_56
46.9
NK_57
46.8
NK_58
45.9
NK_59
45.9
NK_60
45.8
NK_61
45.7
NK_62
45.7
NK_63
45.6
NK_64
45.3
NK_65
44.8
NK_66
44.7
NK_67
44.4
NK_68
44.2
NK_69
44.0
NK_70
43.6
NK_71
42.6
NK_72
42.0
NK_73
41.4
NK_74
40.7
NK_75
40.4
NK_76
40.3
NK_77
39.7
NK_78
39.1
NK_79
38.6
NK_80
38.1
NK_81
36.9
NK_82
36.8
NK_83
36.3
NK_84
35.8
NK_85
35.1
NK_86
34.0
NK_87
33.8
NK_88
33.4
NK_89
32.7
NK_90
29.3
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