BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:394.5 nTPM
HPA Brain:915.6 nTPM
GTEx:394.5 nTPM
FANTOM5:1068.1 Scaled Tags Per Million
Macaque:866.1 nTPM
Mouse:628.8 nTPM
Rat:739.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 915.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 718.2
2019 Male, age 18, unknown 1045.1
2666 Male, age 74, left hemisphere 820.5
2586 Male, age 75, left hemisphere 806.7
1827 Male, age 72, unknown 802.3
2828 Female, age 72, unknown 635.0
1870 Female, age 42, unknown 633.5
1833 Male, age 53, unknown 624.9
1830 Male, age 51, unknown 613.4
2411 Female, age 72, unknown 610.0
2219 Male, age 76, both hemispheres 590.6
Dorsal raphe nucleus
nTPM: 618.8
2298 Female, age 72, unknown 694.8
1828 Male, age 53, unknown 657.9
2047 Male, age 72, unknown 634.9
2016 Female, age 72, unknown 576.3
2750 Male, age 76, both hemispheres 530.0
Inferior colliculus
nTPM: 712.5
2097 Female, age 72, unknown 809.0
2849 Male, age 72, unknown 704.4
1848 Female, age 42, unknown 699.9
1890 Male, age 53, unknown 636.8
Median raphe nucleus
nTPM: 586.9
2220 Male, age 76, midline 586.9
Periaquaductal grey, anterior
nTPM: 728.2
2502 Female, age 75, unknown 817.6
1795 Male, age 51, unknown 714.7
1947 Male, age 18, unknown 652.2
Periaquaductal grey, dorsal
nTPM: 617.6
2850 Male, age 76, both hemispheres 665.6
1840 Male, age 53, unknown 625.1
2464 Female, age 72, unknown 591.0
1831 Male, age 72, unknown 588.8
Periaquaductal grey, lateral
nTPM: 592.4
2272 Male, age 74, both hemispheres 629.6
2053 Male, age 18, unknown 626.7
2140 Male, age 76, both hemispheres 521.1
Pretectal area
nTPM: 915.6
1816 Male, age 51, unknown 1352.2
1944 Female, age 72, unknown 1351.3
1817 Female, age 42, unknown 1314.3
2007 Male, age 72, unknown 1270.8
1815 Male, age 53, unknown 1071.7
2407 Male, age 75, both hemispheres 685.0
2667 Female, age 75, unknown 674.6
2224 Female, age 72, unknown 652.9
2273 Male, age 74, both hemispheres 629.0
2825 Male, age 18, unknown 585.7
2316 Male, age 76, right hemisphere 483.8
Red nucleus
nTPM: 663.2
2785 Male, age 18, unknown 929.1
1821 Female, age 72, unknown 766.2
2588 Male, age 74, left hemisphere 725.9
2584 Male, age 75, left hemisphere 710.9
2725 Female, age 75, unknown 707.2
2503 Female, age 72, unknown 658.8
1865 Male, age 51, unknown 632.7
1954 Female, age 42, unknown 623.5
2823 Male, age 76, right hemisphere 594.0
2769 Male, age 72, unknown 541.6
2227 Male, age 72, unknown 536.6
1904 Male, age 53, unknown 532.3
Substantia nigra
nTPM: 727.9
1889 Female, age 72, unknown 1027.3
1941 Male, age 53, unknown 1012.5
2665 Male, age 74, both hemispheres 801.5
2583 Male, age 75, right hemisphere 731.2
2590 Female, age 75, unknown 714.1
1851 Male, age 51, unknown 648.0
1916 Female, age 42, unknown 643.7
2241 Male, age 72, unknown 611.3
2409 Female, age 72, unknown 602.5
2699 Male, age 18, unknown 487.5
Superior colliculus
nTPM: 781.2
2087 Female, age 72, unknown 994.3
2664 Male, age 75, both hemispheres 849.1
2261 Male, age 18, unknown 821.8
1995 Male, age 72, unknown 805.5
2668 Female, age 75, unknown 802.3
1895 Male, age 76, right hemisphere 729.1
1913 Female, age 42, unknown 728.4
1796 Male, age 53, unknown 703.6
2587 Male, age 74, left hemisphere 696.7
1839 Male, age 51, unknown 681.1
Ventral tegmental area
nTPM: 602.6
2223 Female, age 72, unknown 689.7
2410 Female, age 72, unknown 664.3
2218 Male, age 76, both hemispheres 601.6
1942 Male, age 51, unknown 571.8
1915 Female, age 42, unknown 558.8
2021 Male, age 53, unknown 529.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 394.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 394.5
Samples: 183

Max nTPM: 1118.9
Min nTPM: 212.7
Std nTPM: 128.0
Median nTPM: 373.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1118.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1050.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 1011.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 894.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 889.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 727.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 701.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 607.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 590.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 575.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 568.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1068.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1068.1
FF:10158-103A5 76 years, female 1068.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 866.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 568.5
Samples: 1

Max nTPM: 568.5
Min nTPM: 568.5
Sample A 568.5
Midbrain
nTPM: 686.0
Samples: 1

Max nTPM: 686.0
Min nTPM: 686.0
Sample A 686.0
Superior colliculi
nTPM: 866.1
Samples: 1

Max nTPM: 866.1
Min nTPM: 866.1
Sample A 866.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 628.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 628.8
Samples: 4

Max nTPM: 649.5
Min nTPM: 586.6
Sample A 632.6
Sample B 586.6
Sample C 649.5
Sample D 646.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 739.2
Rat sample Sample description nTPM
Midbrain
nTPM: 739.2
Samples: 4

Max nTPM: 776.2
Min nTPM: 699.2
Sample A 740.5
Sample A 776.2
Sample A 741.0
Sample A 699.2

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