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  • ECI2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:46.7 nTPM
HPA Brain:23.4 nTPM
GTEx:46.7 nTPM
FANTOM5:37.4 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:51.5 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.4
Sample id Sample description nTPM
Amygdala
nTPM: 23.4
2695 Female, age 67, right hemisphere 27.9
2814 Male, age 76, right hemisphere 25.2
2514 Male, age 75, right hemisphere 23.2
1987 Female, age 91, left hemisphere 21.5
2517 Female, age 94, left hemisphere 19.5
Basal amygdala
nTPM: 18.8
2609 Male, age 75, right hemisphere 26.7
2110 Male, age 80, left hemisphere 20.9
2243 Female, age 91, right hemisphere 19.5
1955 Male, age 76, both hemispheres 18.6
2685 Female, age 94, left hemisphere 13.5
2827 Female, age 67, right hemisphere 13.3
Central amygdala
nTPM: 21.5
1905 Male, age 76, both hemispheres 25.9
2515 Male, age 75, right hemisphere 23.5
2701 Female, age 91, right hemisphere 20.2
2826 Female, age 94, left hemisphere 19.2
2239 Male, age 80, left hemisphere 18.8
Corticomedial amygdala
nTPM: 19.3
2428 Male, age 75, right hemisphere 24.7
2240 Male, age 76, both hemispheres 20.5
2429 Female, age 94, left hemisphere 19.4
2829 Male, age 80, left hemisphere 18.1
2242 Female, age 91, right hemisphere 17.8
2535 Female, age 67, right hemisphere 15.3
Lateral amygdala
nTPM: 19.6
2516 Male, age 75, right hemisphere 24.0
1883 Male, age 76, both hemispheres 23.6
2830 Female, age 67, right hemisphere 19.0
2255 Female, age 91, right hemisphere 17.9
2256 Male, age 80, left hemisphere 16.8
2534 Female, age 94, left hemisphere 16.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 46.7
Samples: 181

Max nTPM: 121.9
Min nTPM: 18.8
Std nTPM: 15.9
Median nTPM: 43.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 121.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 94.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 84.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 83.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 83.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 80.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 79.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 78.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 75.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 75.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 74.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 71.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 69.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 69.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 67.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 66.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 66.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 65.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 64.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 62.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 62.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 62.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 61.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 60.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 60.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 60.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 60.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 60.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 59.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 59.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 59.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 57.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 56.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 56.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 55.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 55.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 55.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 55.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 54.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 53.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 53.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 52.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 52.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 51.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 51.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 51.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 51.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 51.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 50.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 50.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 50.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 48.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 48.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 48.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 48.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 47.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 47.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 46.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 46.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 46.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 45.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 45.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 45.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 44.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 44.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 44.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 44.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 44.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 43.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 43.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 43.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 43.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 43.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 43.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 42.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 42.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 42.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 42.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 42.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 42.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 41.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 41.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 41.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 41.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 41.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 41.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 40.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 40.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 40.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 39.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 39.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 39.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 39.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 38.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 37.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 37.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 37.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 37.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 37.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 37.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 37.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 37.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 36.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 36.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 36.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 36.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 36.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 36.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 36.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 36.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 36.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 36.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 36.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 35.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 35.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 34.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 34.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 34.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 34.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 33.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 33.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 33.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 33.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 32.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 32.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 32.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 32.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 32.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 32.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 31.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 31.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 30.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 30.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 30.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 30.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 30.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 30.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 29.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 29.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 29.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 27.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 26.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 26.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 26.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 26.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 25.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 25.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 25.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 24.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 23.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 23.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 22.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 20.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 18.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 37.4
FF:10151-102I7 76 years, female 37.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.2
Pig sample Sample description nTPM
Amygdala
nTPM: 6.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 6.8
Sample C Male 5.9
Sample D Male 6.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
68666625 Antisense, RP_050126_02_F06, Mouse strain C57BL/6J (56 days, male) 0.4
100144173 Antisense, RP_110407_03_D02, Mouse strain C57BL/6J (56 days, male) 0.3
Cortical subplate
Expression energy: 0.4
68666625 Antisense, RP_050126_02_F06, Mouse strain C57BL/6J (56 days, male) 0.4
100144173 Antisense, RP_110407_03_D02, Mouse strain C57BL/6J (56 days, male) 0.3

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